total number of peaks vs putative peaks

0

Entering edit mode

8.9 years ago

Azhar ▴ 50

I have done some chip-seq analysis, and I have got 560 total number of peaks and 860 putative peaks ? what is answer to this question ? limit of peak hight was 144, is that means putative peaks are above tha limit those are false postive not included in total number of peaks?

ChIP-Seq • 1.7k views

ADD COMMENT • link updated 16 months ago by Ram 43k • written 8.9 years ago by Azhar ▴ 50

0

Entering edit mode

What package did you do your analysis in?

ADD REPLY • link updated 16 months ago by Ram 43k • written 8.9 years ago by Jautis ▴ 530

0

Entering edit mode

Homer factor -200

ADD REPLY • link 8.9 years ago by Azhar ▴ 50

0

Entering edit mode

Sorry, I've never heard of that one. I'm not sure I can be of any help

ADD REPLY • link 8.9 years ago by Jautis ▴ 530

0

Entering edit mode

what you mean by pakage? I used Homer findPeaks factor-200 command

ADD REPLY • link 8.9 years ago by Azhar ▴ 50

0

Entering edit mode

By package I mean whatever program you were using for analysis (so in this case Homer). That isn't a program I've heard of before so I don't know what the output means

ADD REPLY • link 8.9 years ago by Jautis ▴ 530

Login before adding your answer.