How To Identify Targets of A Transcription Factor for Bos Taurus?

Question

[rodbari.zahra]

I have a list of transcription factors from a high-throughput experiment for Cow. I would like to know about the probable target genes of these transcription factors.

[andrew.j.skelton73]

What kind of experiment? RNA Seq? ChIP Seq?

[Jautis]

Or more generally, do you currently have experimental data or are you looking to make a prediction from motifs?

[rodbari.zahra]

I have Expression Data(Micro array). I want interaction between TF and target gene database in Bos tauruse

Answer 1

[andrew.j.skelton73]

I'd say your best bet is to look here, and look for binding sites based on your probe sequences. http://www.bioconductor.org/help/workflows/gene-regulation-tfbs/

[rodbari.zahra]

I have Agilent ID, then convered to Ensemble ID for Another analysis.I need to one file with Esemble ID,TF, Target gene. with this way I can get this result?