Population Frequency Data of Mitochondrial Variants

Question

[Can Holyavkin]

Where can I download the population frequency data of all mitochondrial variants?

I checked the HapMap database, but it only includes the nuclear variants.

Answer 1

[Jeremy Leipzig]

The GenBank frequency data (out of about 30k full length mitochondrial sequences) for any given variant is available in MITOMASTER

MITOMAP provides curated polymorphisms and disease dumps of various formats with these counts and frequencies

• http://mitomap.org/cgi-bin/disease.cgi?format=vcf
• http://mitomap.org/cgi-bin/polymorphisms.cgi?format=vcf

These will probably evolve as we develop breakdowns by major haplogroup.

[Can Holyavkin]

Thank you. It helped. :)