0
votes
4
replies
509
views
1
vote
9
replies
731
views
0
votes
0
replies
20
views
1 hour ago by
hemantcnaik
•
0
0
votes
2
replies
693
views
0
votes
3
replies
106
views
updated 2 hours ago by
GenoMax
141k
•
written 4 hours ago by
Bertalan_Takacs
▴
90
0
votes
0
replies
45
views
0
votes
0
replies
35
views
4 hours ago by
David Langenberger
11k
795
votes
167
replies
141k
views
109 follow
updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
0
votes
0
replies
45
views
0
votes
14
replies
3.4k
views
6 follow
updated 5 hours ago by
drstalinantony28
•
0
•
written 2.2 years ago by
ymj
▴
10
0
votes
1
reply
67
views
updated 3 hours ago by
Sofia
•
0
•
written 7 hours ago by
mawigoj318
•
0
0
votes
0
replies
64
views
8 hours ago by
salias
•
0
4
votes
5
replies
226
views
0
votes
2
replies
119
views
updated 5 hours ago by
Istvan Albert
100k
•
written 9 hours ago by
sehriban.buyukkilic
▴
10
0
votes
0
replies
51
views
0
votes
0
replies
44
views
0
votes
1
reply
92
views
0
votes
0
replies
49
views
11 hours ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
48
views
0
votes
2
replies
124
views
0
votes
2
replies
158
views
2
votes
2
replies
140
views
updated 14 hours ago by
analyst
▴
30
•
written 19 hours ago by
lorena9132
•
0
0
votes
0
replies
64
views
7
votes
2
replies
205
views
updated 19 hours ago by
geneontologyhelp
▴
390
•
written 2 days ago by
catherine.teyssier
•
0
0
votes
1
reply
154
views
updated 20 hours ago by
Istvan Albert
100k
•
written 2 days ago by
Abeer
•
0
0
votes
4
replies
232
views
0
votes
1
reply
103
views
updated 14 hours ago by
Mensur Dlakic
★
27k
•
written 20 hours ago by
benguyarenbeyaz98
•
0
0
votes
2
replies
183
views
updated 10 hours ago by
b.contreras.moreira
▴
170
•
written 21 hours ago by
v.berriosfarias
▴
140
2
votes
1
reply
158
views
1
vote
1
reply
128
views
updated 21 hours ago by
Pierre Lindenbaum
161k
•
written 22 hours ago by
Biostar
2.7k
1
vote
1
reply
106
views
updated 22 hours ago by
GenoMax
141k
•
written 22 hours ago by
heelpPlease
•
0
2
votes
9
replies
774
views
0
votes
10
replies
339
views
0
votes
1
reply
115
views
updated 23 hours ago by
bk11
★
2.3k
•
written 23 hours ago by
alphaflylizard
•
0
3
votes
3
replies
175
views
0
votes
3
replies
195
views
updated 20 hours ago by
Istvan Albert
100k
•
written 1 day ago by
Dylan
•
0
1
vote
4
replies
154
views
4
votes
11
replies
453
views
3
votes
13
replies
567
views
0
votes
0
replies
73
views
1 day ago by
ohtang7
▴
40
3
votes
0
replies
93
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
carlopecoraro2
★
2.5k
2
votes
2
replies
390
views
updated 1 day ago by
Pierre Lindenbaum
161k
•
written 8 months ago by
AshleeThomson
▴
80
0
votes
1
reply
129
views
8
votes
5
replies
4.9k
views
0
votes
5
replies
252
views
5
votes
4
replies
602
views
13 hours ago by
kirillkirilenko
▴
40
0
votes
0
replies
75
views
0
votes
3
replies
352
views
0
votes
0
replies
87
views
1
vote
3
replies
187
views
Recent Locations •
All
United States, 6 minutes ago
Finland, 6 minutes ago
Canada, 8 minutes ago
United Kingdom, 9 minutes ago
United States, 10 minutes ago
United States, 11 minutes ago
Poland, 12 minutes ago
Recent Awards •
All
Popular Question to
Russ
▴
500
Popular Question to
camillab.
▴
160
Popular Question to
pramach1
▴
40
Popular Question to
Adyasha
•
0
Popular Question to
sehriban.buyukkilic
▴
10
Popular Question to
O.rka
▴
710
Popular Question to
Akash D
▴
40
Recent Replies
Comment: Troubleshooting RNA-seq data with DNA contamination
by
GenoMax
141k
Please post information about your tool as a `tools` category post. Don't wait/ask other users to ask you.
Comment: Adding CB tag to bam file
by
Maria
•
0
Sorry for the delay in my answer, I got sidetracked.
I am using
```samtools addreplacerg -r "@RG\tID:$cell" -o $cell.bam -h $LINE```
bu…
Answer: Troubleshooting RNA-seq data with DNA contamination
by
haibol2017
▴
10
We just developed a R package to tackle this problem.
Do you have stranded or unstranded RNA-seq data contaminated with gDNA?
If you wou…
Comment: How to trim transcripts using information from NCBI contamination screen report
by
GenoMax
141k
`bbduk.sh` can use the transcripts as input. There is a `adapters.fa` included in the `resources` directory of the distribution. You can do…
Comment: PCA plot (Suggestions Needed)
by
swbarnes2
14k
Cross posted here (including the code used to make up the counts):
https://support.bioconductor.org/p/9157911/#9157959
Comment: To get p-values for the TPM
by
swbarnes2
14k
RSEM returns a kind of p-value if you run it with the "prior-enhanced" option. Did you do that? Are you completely sure that's the value y…
Comment: How to trim transcripts using information from NCBI contamination screen report
by
Lada
▴
30
i checked both of these programs (`bbduk` and `fastp`) and it seems they use reads as inputs (fastq formats)... how can I trim my transcrip…
Comment: AGeNT LocatIt
by
barslmn
★
2.1k
He is already giving 32G, 320G for marking duplicates for exome is excessive. Is there a specific reason for using the tool?
Comment: How to convert plink files to Hapmap Format
by
bk11
★
2.3k
This looks good. Please try with using `--allow-no-sex flag`
plink --bfile your_data_phenoUP --assoc --allow-no-sex --out your_data_ph…
Comment: How to convert plink files to Hapmap Format
by
Sofia
•
0
SC899359_PC75420_A05 SC899359_PC75420_A05 0 0 0 2
SC899360_PC75415_D01 SC899360_PC75415_D01 0 0 0 2
SC899361_PC75425_H05 SC899361_PC75425_H…
Comment: How to convert plink files to Hapmap Format
by
bk11
★
2.3k
Please show me a few lines of phenotype updated .fam file. You can do `head
your_data_phenoUP.fam` and paste result here. Please do not us…
Comment: GEMMA GWAS how to specify factor or numerical for covariates
by
Sofia
•
0
Hi, I don't have a solution to your question but I followed this tutorial and was helpful to me in my analysis https://youtu.be/NusV6duyvXs…
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas
by
GenoMax
141k
Catalog file lists the genomes included. There seem to be 71365 unique items in field 2.
2 Bacteria WP_000018326.1 4459…
Comment: How to convert plink files to Hapmap Format
by
Sofia
•
0
yes sure !
![enter image description here][1]
[1]: /media/images/f0f94f6c-4387-4188-a1aa-19152a89
Answer: AGeNT LocatIt
by
Greg
•
0
Give it more memory.
~10x more memory, or whatever you can give it,
I had samples that weren't even close to being done after 3.5 da…
Traffic: 2553 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6