RNA-seq experiments, usually are made in parallel with the Ribosomal profiling experiments.

Question

[zizigolu]

Hey guys,

In GSE35641 for ribo-seq, how I can differentiate RNA-seq experiments from Ribosomal profiling experiments? I mean I don't know which sra file is ribo-seq and which is RNA-seq.

May you tell me

Answer 1

[Manvendra Singh]

You can actually get the complete information here

from arrayexpress,

E-GEOD-35641

you have all the possible info which you should have during the analysis

hth

[zizigolu]

Thanks a lot,

I found GSM872399 is for total transcriptom but in sra accession the same is for footprint. Does this mean GSM872399 is the RNA-seq or ribo-seq?

[zizigolu]

Sorry I read the proposed page but I got confused where is the RNA-seq accession because all telling about ribo-seq. May you tell me more please?