Entering edit mode
9.0 years ago
weiven90
▴
20
I am a new to this field and trying to install QIIME to a ubuntuserver where I need to use the scripts to build a simple web-based app for a class assignment. I use http://qiime.org/1.8.0/install/install.html to do the base installation using pip. I tried to install pip using
sudo apt-get install python-pip
and got this error
Err http://us.archive.ubuntu.com/ubuntu/ raring/main dpkg-dev all 1.16.10ubuntu1
404 Not Found [IP: 91.189.91.14 80]
Err http://us.archive.ubuntu.com/ubuntu/ raring/main build-essential i386 11.6ubuntu4
404 Not Found [IP: 91.189.91.14 80]
Err http://us.archive.ubuntu.com/ubuntu/ raring/main fakeroot i386 1.18.4-2ubuntu1
404 Not Found [IP: 91.189.91.14 80]
Err http://us.archive.ubuntu.com/ubuntu/ raring/main libalgorithm-diff-xs-perl i386 0.04-2build3
404 Not Found [IP: 91.189.91.14 80]
Err http://us.archive.ubuntu.com/ubuntu/ raring/main python-setuptools all 0.6.34-0ubuntu1
404 Not Found [IP: 91.189.91.14 80]
Err http://us.archive.ubuntu.com/ubuntu/ raring/universe python-pip all 1.3.1-0ubuntu1
404 Not Found [IP: 91.189.91.14 80]
Failed to fetch http://us.archive.ubuntu.com/ubuntu/pool/main/g/gcc-4.7/libstdc++6-4.7-dev_4.7.3-1ubuntu1_i386.deb 404 Not Found [IP: 91.189.91.14 80]
Failed to fetch http://us.archive.ubuntu.com/ubuntu/pool/main/g/gcc-4.7/g++-4.7_4.7.3-1ubuntu1_i386.deb 404 Not Found [IP: 91.189.91.14 80]
Failed to fetch http://us.archive.ubuntu.com/ubuntu/pool/main/g/gcc-defaults/g++_4.7.3-1ubuntu10_i386.deb 404 Not Found [IP: 91.189.91.14 80]
Failed to fetch http://us.archive.ubuntu.com/ubuntu/pool/main/d/dpkg/dpkg-dev_1.16.10ubuntu1_all.deb 404 Not Found [IP: 91.189.91.14 80]
Failed to fetch http://us.archive.ubuntu.com/ubuntu/pool/main/b/build-essential/build-essential_11.6ubuntu4_i386.deb 404 Not Found [IP: 91.189.91.14 80]
Failed to fetch http://us.archive.ubuntu.com/ubuntu/pool/main/f/fakeroot/fakeroot_1.18.4-2ubuntu1_i386.deb 404 Not Found [IP: 91.189.91.14 80]
Failed to fetch http://us.archive.ubuntu.com/ubuntu/pool/main/liba/libalgorithm-diff-xs-perl/libalgorithm-diff-xs-perl_0.04-2build3_i386.deb 404 Not Found [IP: 91.189.91.14 80]
Failed to fetch http://us.archive.ubuntu.com/ubuntu/pool/main/d/distribute/python-setuptools_0.6.34-0ubuntu1_all.deb 404 Not Found [IP: 91.189.91.14 80]
Failed to fetch http://us.archive.ubuntu.com/ubuntu/pool/universe/p/python-pip/python-pip_1.3.1-0ubuntu1_all.deb 404 Not Found [IP: 91.189.91.14 80]
E: Unable to fetch some archives, maybe run apt-get update or try with --fix-missing?
Should I use qiime deploy instead? I tried to follow https://github.com/qiime/qiime-deploy
But I don't really understand how it works and not sure with the version of my Ubuntu.
UPDATE: I tried to follow http://qiime.org/1.8.0/install/install.html on my machine with ubuntu 14.04 virtual machine and working internet. I installed pip and ran
sudo apt-get install build-essential
and
pip install numpy==1.7.1
but got this error
Exception:
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/pip/basecommand.py", line 122, in main
status = self.run(options, args)
File "/usr/lib/python2.7/dist-packages/pip/commands/install.py", line 283, in run
requirement_set.install(install_options, global_options, root=options.root_path)
File "/usr/lib/python2.7/dist-packages/pip/req.py", line 1431, in install
requirement.uninstall(auto_confirm=True)
File "/usr/lib/python2.7/dist-packages/pip/req.py", line 598, in uninstall
paths_to_remove.remove(auto_confirm)
File "/usr/lib/python2.7/dist-packages/pip/req.py", line 1836, in remove
renames(path, new_path)
File "/usr/lib/python2.7/dist-packages/pip/util.py", line 295, in renames
shutil.move(old, new)
File "/usr/lib/python2.7/shutil.py", line 303, in move
os.unlink(src)
OSError: [Errno 13] Permission denied: '/usr/local/bin/f2py'
Traceback (most recent call last):
File "/usr/local/bin/pip", line 9, in <module>
load_entry_point('pip==1.5.4', 'console_scripts', 'pip')()
File "/usr/lib/python2.7/dist-packages/pip/__init__.py", line 235, in main
return command.main(cmd_args)
File "/usr/lib/python2.7/dist-packages/pip/basecommand.py", line 161, in main
text = '\n'.join(complete_log)
UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 72: ordinal not in range(128)
Should I continue with
pip install qiime
Did you do
sudo apt-get updatebefore installing?Yes and these are the last several lines of error.