Cufflinks 0.0.7 and CummeRbound

Question

[bixdw]

Hi All,

Has anyone had any experience with using cufflinks 0.0.7 from the Galaxy Main with CummeRbound package? Does it work or is there something I should be concerned about? CummeRbound manual recommends cufflinks 2.0 or higher. I do not have Linux machine nor do I have access to one at present. I am forced to use the Galaxy Main server. Any help greatly appreciated

Best wishes

Answer 1

[Jordan]

I think galaxy has the latest cufflinks version (2.2.1). Look at the tool shed of cufflinks: https://toolshed.g2.bx.psu.edu/repository?repository_id=bd9dafa96fea7d66

The version 0.0.7 you mention is the galaxy tool version not the cufflinks version.

[bixdw]

Thank you for the reply to my question. It is a lot off my mind knowing that the cufflinks version is up to date. I am a beginner in RNA-seq analysis and haven't had much experience with Galaxy either. best wishes