Does anyone know the repository site for the "Trrific enhancers" A. Shilatifard - Mol Cell Biol. 2013 Dec;33(23):4745-54. doi: 10.1128/MCB.01181-13. Epub 2013 Sep 30.
Much appreciated!!
-Sanchez
Is this what you mean? Looks like the data was deposited at GEO...
For mouse ES cells, H3K4me1, H3K27ac, and p300 ChIP-seq data are from GEO accession number GSE24164 (5). H3K4me3 ChIP-seq data are from GEO accession number GSE12241 (33). For human HCT116 cells, H3K27ac ChIP-seq data are from GEO accession number GSE38447 (34). Data in the present study are deposited at GEO under GEO accession number GSE51176.
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Just talked to Xin Gao, and she suggested contacting Ali Shilatifard ash at northwestern dot edu or the lead author deqing.hu at northwestern dot edu.
Madelaine,
Thank you for the reply!
The GEO accession numbers correspond to peak files from individual ChIP-seq experiments but I'm still searching for the bed or fasta files with the genomic location of the enhancers. I did send an email to Deqing Hu using the stowers extension a couple of weeks ago will try the northwestern address.
Cheers, Gilson