0
votes
1
reply
69
views
1
vote
0
replies
13
views
1
vote
1
reply
26
views
updated 55 minutes ago by
GenoMax
141k
•
written 1 hour ago by
heelpPlease
•
0
0
votes
6
replies
582
views
0
votes
6
replies
62
views
795
votes
167
replies
141k
views
109 follow
updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
0
votes
1
reply
34
views
updated 1 hour ago by
bk11
★
2.3k
•
written 2 hours ago by
alphaflylizard
•
0
2
votes
3
replies
82
views
0
votes
2
replies
88
views
0
votes
1
reply
53
views
updated 2 hours ago by
Pierre Lindenbaum
161k
•
written 3 hours ago by
Lada
▴
30
3
votes
10
replies
331
views
3
votes
7
replies
370
views
0
votes
0
replies
34
views
5 hours ago by
ohtang7
▴
40
0
votes
0
replies
40
views
2
votes
0
replies
52
views
updated 5 hours ago by
Ram
43k
•
written 5 hours ago by
carlopecoraro2
★
2.5k
2
votes
2
replies
352
views
updated 6 hours ago by
Pierre Lindenbaum
161k
•
written 8 months ago by
AshleeThomson
▴
80
0
votes
1
reply
78
views
8
votes
5
replies
4.7k
views
0
votes
4
replies
163
views
5
votes
3
replies
520
views
updated 8 hours ago by
colindaven
6.4k
•
written 5 days ago by
kirillkirilenko
▴
40
0
votes
0
replies
42
views
0
votes
3
replies
313
views
0
votes
0
replies
50
views
1
vote
3
replies
145
views
0
votes
3
replies
145
views
1
vote
1
reply
108
views
updated 10 hours ago by
Michael
54k
•
written 12 hours ago by
michael.flower.14
▴
180
0
votes
2
replies
117
views
0
votes
1
reply
80
views
updated 5 hours ago by
bk11
★
2.3k
•
written 11 hours ago by
Susmita Mandal
▴
110
0
votes
1
reply
84
views
updated 9 hours ago by
GenoMax
141k
•
written 12 hours ago by
sarahawan92
▴
10
0
votes
3
replies
443
views
updated 12 hours ago by
atharvakarkare14
▴
10
•
written 5 days ago by
Ashok
•
0
1
vote
1
reply
115
views
0
votes
1
reply
109
views
updated 12 hours ago by
Basti
★
2.0k
•
written 15 hours ago by
qudrat.nii
▴
10
0
votes
0
replies
81
views
Forum:
Improvement on automatic annotation of single-cell RNA-seq data from the literature using LLM
16 hours ago by
yxwucq
•
0
0
votes
0
replies
51
views
0
votes
6
replies
214
views
0
votes
2
replies
136
views
1 day ago by
sainavyav22
•
0
0
votes
1
reply
106
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
Cameron.walker9900
•
0
0
votes
8
replies
239
views
1
vote
4
replies
170
views
updated 1 day ago by
Mensur Dlakic
★
27k
•
written 1 day ago by
Κοσμάς
•
0
0
votes
0
replies
81
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
maxime.policarpo
▴
200
3
votes
3
replies
144
views
0
votes
0
replies
67
views
0
votes
2
replies
127
views
1 day ago by
dxj294
•
0
0
votes
0
replies
74
views
0
votes
0
replies
117
views
1
vote
3
replies
2.4k
views
updated 23 hours ago by
chrchang523
10k
•
written 6.1 years ago by
Ginevra
▴
10
2
votes
1
reply
115
views
updated 1 day ago by
ATpoint
81k
•
written 1 day ago by
catherine.teyssier
•
0
2
votes
3
replies
167
views
12 hours ago by
michelafrancesconi9
▴
20
0
votes
0
replies
74
views
1
vote
5
replies
175
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
marco.barr
▴
80
Recent Votes
Recent Locations •
All
United States, just now
Moscow, just now
UCLA, just now
United States, 1 minute ago
Cambridge, MA, 5 minutes ago
University Park, USA, 5 minutes ago
United States, 5 minutes ago
Recent Awards •
All
Popular Question to
AdviceSeeker
•
0
Great Question to
Ann
★
2.4k
Scholar to
marco.barr
▴
80
Popular Question to
Kash
▴
110
Popular Question to
pfee418
▴
10
Recent Replies
Answer: Seurat merge and batch correction
by
bk11
★
2.3k
You can merge your seven Seurat objects and perform integration using **Seurat V5** to remove the batch effect-
library(Seurat)
…
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie
by
atowns21
•
0
Yeah, I've been digging around the web for a while now. Can't find any information about the barcodes. The total number of combinations is …
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie
by
GenoMax
141k
Ah I see that in now. I am not sure why MGI has split the whitelist into two sections. You may need to see if you can dig up some info abou…
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie
by
atowns21
•
0
read 1 is 30bp... which I think you meant to type. If you scroll approximately halfway down the json file I linked to, it has the following…
Comment: TCGA2STAT Error: Firehose connection
by
Ram
43k
The package has been removed from CRAN and BioConductor. Should you even be using it?
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie
by
GenoMax
141k
The barcodes are in location 1-10 and you have the actual list there. I don't know for certain what is in position 11-20 (perhaps spacer, c…
Answer: Including plasmid in transcriptome assemblies
by
GenoMax
141k
> I want to use both STAR and BOWTIE2 for assembly
Those programs are aligners not assemblers. But since you are working with bacteria yo…
Comment: How to slice a gvcf file with tabix?
by
Sd
•
0
I already have gvcfs called by chromosome and there are 24 gvcfs per sample which I merged them into a single gvcf per sample. Now I want …
Comment: Find subcluster under a cluster, find differential genes in one cluster between
by
bk11
★
2.3k
First, could you please explain any reason for not using Seurat V5 approach for your data integration mentioned in [here][1]?
> Now moving…
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie
by
atowns21
•
0
So I'd take the json file located [here][1] and essentially create the whitelist to be all possible combinations of the position 1-10 barco…
Comment: TCGA2STAT Error: Firehose connection
by
Ngrin
•
0
Hey Gnana, could you find a way to solve the issue? I have the same error
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie
by
GenoMax
141k
You simply need to make a list of barcodes one on each line: https://kb.10xgenomics.com/hc/en-us/articles/115004506263-What-is-a-barcode-wh…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory
by
GenoMax
141k
> What specifications and operating system would be ideal for my case?
For choice of OS: Linux to access the large pool of open source sof…
Comment: How to convert plink files to Hapmap Format
by
bk11
★
2.3k
Ok. First update your phenotypes because in the 6th column all the values are -9 meaning missing, and then run `--assoc`. You can do the fo…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory
by
i.sudbery
19k
You'll probably get away with using one of the other analysis pipelines, like Alevin-fry with much less than 128GB of RAM. Workstations can…
Traffic: 2541 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6