Question

What'S The Most Popular Java Package(S) For Gene-Expression Data Clustering ?

1

Entering edit mode

12.7 years ago

Sean ▴ 10

Hi,

Was wondering if anyone could introduce some methods of microarray experiment data set clustring.

(NOTE: I am looking for a java package(s) to do my work.)

Any ideas? thx!!

gene clustering microarray • 2.5k views

ADD COMMENT • link updated 12.7 years ago by Michael 54k • written 12.7 years ago by Sean ▴ 10

score 3 · Answer 1 · 2011-08-31

3

Entering edit mode

12.7 years ago

Istvan Albert 100k

The MultiExperiment Viewer is a good choice.

ADD COMMENT • link 12.7 years ago by Istvan Albert 100k

score 2 · Answer 2 · 2011-08-31

2

Entering edit mode

12.7 years ago

Yogesh Pandit ▴ 520

J-Express is pretty good. Well documented and nice UI

ADD COMMENT • link 12.7 years ago by Yogesh Pandit ▴ 520

score 1 · Answer 3 · 2011-08-31

1

Entering edit mode

12.7 years ago

Michael 54k

I second y2p in that J-Express is probably the most mature and comprehensive environment. You might have to buy a license for it. You can also try Genesis in addition, it has less functions but is free for non-commercial application.

ADD COMMENT • link 12.7 years ago by Michael 54k

score 0 · Answer 4 · 2011-08-31

0

Entering edit mode

12.7 years ago

Nikolay Vyahhi ★ 1.3k

Probably BioJava has this functionality.

ADD COMMENT • link 12.7 years ago by Nikolay Vyahhi ★ 1.3k

1

Entering edit mode

Don't think so, or did you check that?

ADD REPLY • link 12.7 years ago by Michael 54k

0

Entering edit mode

Don't think so.

ADD REPLY • link 12.7 years ago by Michael 54k