Cytoscape: Export all subnetworks to excel seperately

Question

[ancient_learner]

Dear all

I have a networks of 3038 nodes and 6192 edges. I have imported it into the cytoscape and have created subnetworks using Tools->network analyzer -> subnetwork creation. i have got more than 200 subnetworks and I cant export each subnetwork individually. Is there any shortcut to get the interactions in subnetworks seperately in excel or text file? I am looking for some thing like this:

subnet1
geneX geneY
geneX genez
geneY geneV
subnet2
genea geneb
genec genea
geneb genec

[fankaili.bio]

How can we get this to a file(txt or excel)? I run this code and it just show the result on the screen.

Answer 1

[ancient_learner]

I have also posted the same question in cytoscape discussions forum and fortunately got the response. I am putting it here if in case any body gets same kind of problem...

we can use the built-in Commands for Cytoscape to make a very basic script, like this:

network get network=subnet1
edge list network=subnet1
network get network=subnet2
edge list network=subnet2

This will produce output like this:

subnet1
source: Node suid: 77  target: Node suid: 189  directed: true [geneX (pp) geneY]
source: Node suid: 76  target: Node suid: 190  directed: true [geneX (pp) geneZ]
source: Node suid: 76  target: Node suid: 77  directed: true [geneY (pp) geneV]
...
subnet2
source: Node suid: 300  target: Node suid: 299  directed: true [geneA (pp) geneB]
source: Node suid: 299  target: Node suid: 215  directed: true [geneC (pd) geneA]
source: Node suid: 298  target: Node suid: 301  directed: true [geneB (pp) geneC]
...