Entering edit mode
9.9 years ago
Raghav
▴
100
I have a fasta file input, I want change the header in my way like
>AGP1
AAAAAAAAAAAACTCAAAAG
>CRK25
AAAAAAAAAAAACTTTGAACTTGCTT
AT5G27080
AAAAAAAAAAAAGAAAGAA
>AT1G12620
AAAAAAAAAAACAAATT
I want output in this way
>chromosome1
AAAAAAAAAAAACTCAAAAG
>chromosome2
AAAAAAAAAAAACTTTGAACTTGCTT
change all the header in input file with chromosome
and chromosome number like chromosome1 , chromosome2... is equal to number of headers present in input file.
is there way to resolve this problem by using sed awk or shell script?
please suggest me
thank you in advance