Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
116,460 results • Page
1 of 2330
Sort: Rank
Rank
Views
Votes
Replies
0
votes
1
reply
43
views
DEseq2
RNA
DESeq2
seq
updated 7 minutes ago by
ATpoint
81k • written 2 hours ago by
rrehimi
• 0
0
votes
0
replies
15
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
IndividualBasedModels
AgentBasedModels
50 minutes ago by
carlopecoraro2
★ 2.5k
4
votes
2
replies
76
views
Assume "yes" as the answer to any prompts with bioconda
docker
container
bioconda
updated 57 minutes ago by
Juke34
8.5k • written 1 hour ago by
njornet
▴ 20
0
votes
0
replies
28
views
10x VDJ (TCR/BCR) BAM to fastq
TCR
VDJ
BCR
10x
1 hour ago by
predeus
★ 1.9k
0
votes
0
replies
25
views
Tutorial:
DNA Methylation: Sequencing Techniques
WGBS
RRBS
1 hour ago by
Novogene
▴ 410
0
votes
1
reply
316
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
tree
phylogenetic
summarized
microbiome
updated 2 hours ago by
Akshay
• 0 • written 19 months ago by
Muhammad
• 0
0
votes
1
reply
90
views
Korean human genome reference file
GWAS
reference
imputation
updated 2 hours ago by
colindaven
6.3k • written 3 hours ago by
SeoGyun
• 0
1
vote
3
replies
143
views
SLURM submission problem: Indexing the Reference Genome is not done in STAR
align
RNA-Seq
linux
STAR
updated 1 hour ago by
Dave Carlson
★ 1.7k • written 3 hours ago by
n_navy
• 0
0
votes
2
replies
132
views
RNA seq differential expression analysis
Regarding
seq
data
normalization
RNA
3 hours ago by
rrehimi
• 0
0
votes
6
replies
196
views
How can I retrieve wheat lysine non-acetylated sequences from the UniProt database?
UniProt
just now by
Jacky
• 0
795
votes
167
replies
141k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 12 weeks ago by
Biostar
2.6k • written 7.4 years ago by
Istvan Albert
100k
0
votes
0
replies
49
views
How to compare the quality of assemblies
nextdenovo
assembly
hifiasm
pacbio
updated 2 hours ago by
colindaven
6.3k • written 3 hours ago by
kirillkirilenko
▴ 20
0
votes
0
replies
45
views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau
score
tspex
4 hours ago by
bioinfo223
▴ 10
0
votes
0
replies
55
views
How to root an unrooted tree with a known root tree?
phylogenetics
rooting
R
4 hours ago by
P.
• 0
0
votes
0
replies
60
views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpEff
6 hours ago by
ekirsch
• 0
0
votes
0
replies
85
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
11 hours ago by
renan.igor
• 0
1
vote
1
reply
153
views
Pediococcus acidilactici sequence analysis
BLAST
Gene-Ontology
updated 7 hours ago by
Ram
43k • written 13 hours ago by
anasjamshed
▴ 120
3
votes
1
reply
526
views
What is the normalization status of metabric data?
metabric
normalization
microarray
cbioportal
updated 12 hours ago by
etiennedanis
▴ 20 • written 19 months ago by
DareDevil
★ 4.3k
0
votes
0
replies
78
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
13 hours ago by
synat.keam
▴ 100
0
votes
1
reply
168
views
assembly using CCS, CLR, CCS_CLR sequences together?
assembly
updated 15 hours ago by
GenoMax
141k • written 15 hours ago by
ycts
• 0
1
vote
3
replies
362
views
DEG analysis of RNA-seq data across multiple tissues and two conditions
RNA-seq
EdgeR
DEGs
DESeq2
updated 16 hours ago by
swbarnes2
14k • written 18 hours ago by
BioinfGuru
★ 1.7k
1
vote
1
reply
195
views
Inconsistency in SNP detection pipelines for multi-sample analysis
vcf
bam
bcf
snps
updated 17 hours ago by
LChart
3.9k • written 18 hours ago by
George
▴ 10
0
votes
0
replies
98
views
Problem with Mirdeep2 and Randfold output
mirdeep2
Randfold
updated 17 hours ago by
Ram
43k • written 17 hours ago by
otieno43
▴ 20
0
votes
2
replies
231
views
Per base sequence content failed miserably
fastqc
sequence
trimmomatic
NGS
assembly
3 hours ago by
Kai Xin
• 0
1
vote
1
reply
160
views
Retrieve a % coverage for each transcript
RNA-seq
updated 18 hours ago by
Ram
43k • written 19 hours ago by
jammydodger123456
▴ 40
0
votes
1
reply
276
views
Pruning Phylogenetic Trees and Bootstrap Values
phylogenetics
bootstrap
updated 19 hours ago by
Klaus S
▴ 150 • written 6 days ago by
Zeng Hao
▴ 40
0
votes
2
replies
250
views
How can I solve this error?
metal
8 hours ago by
22211020193
• 0
0
votes
0
replies
96
views
Struggling to lift genome builds
PLINK
liftover
GWAS
updated 19 hours ago by
GenoMax
141k • written 20 hours ago by
srimmer
• 0
1
vote
2
replies
191
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 18 hours ago by
Ram
43k • written 20 hours ago by
aniigodwinn
• 0
0
votes
2
replies
200
views
Sheep reference genome remapping coordinates
reference
remap
sheep
coordinates
genome
updated 20 hours ago by
colindaven
6.3k • written 1 day ago by
valentinatsar
• 0
1
vote
3
replies
203
views
Editing Human Reference Genome by adding a CDS
gff
agat
transcriptome
updated 20 hours ago by
Michael
54k • written 21 hours ago by
LDT
▴ 330
0
votes
8
replies
378
views
Questions about a bug when transferring cram file to bam file
sequence
samtools
bcftools
updated 19 hours ago by
Pierre Lindenbaum
161k • written 22 hours ago by
me
• 0
0
votes
1
reply
211
views
differential gene expression analysis when not all samples have an untreated counterpart
differential-expression
edgeR
updated 22 hours ago by
Gordon Smyth
★ 7.0k • written 8 days ago by
nhaus
▴ 300
0
votes
0
replies
169
views
Looking for an explanation as to what the Peak Score is from HOMER, not finding any answers on Biostars yet
Homer
ATAC-seq
23 hours ago by
Ronin
• 0
4
votes
2
replies
1.7k
views
How to convert SAM/BAM file to GTF/GFF file?
GTF
SAM
BAM
GFF
minimap2
updated 1 day ago by
Dr.Animo
▴ 130 • written 11 months ago by
BioinfoBee
• 0
2
votes
6
replies
514
views
Removing duplicates
duplicates
ONT
minimap2
4 hours ago by
quentinperriere
• 0
0
votes
1
reply
141
views
Annotating a dataset with gnomAD v4 using Hail
Python
Sequencing
Hail
Exome
Annotation
updated 1 day ago by
DKA
▴ 40 • written 1 day ago by
james.melhorn
• 0
3
votes
4
replies
226
views
biomaRt error for different R version
biomaRt
R
updated just now by
GenoMax
141k • written 1 day ago by
manaswwm
▴ 490
0
votes
1
reply
130
views
Freyja plot error
Freyja
updated 20 hours ago by
Ram
43k • written 1 day ago by
Adyasha
• 0
1
vote
2
replies
146
views
Interpretation of combined P values - RNA microarray meta analysis
metaanalysis
R
microarray
DExMA
combinedP
1 day ago by
hagl
▴ 10
0
votes
0
replies
94
views
BIOM format can contain tabular data ?
BIOM
phyloseq
biomformat
R
1 day ago by
chemokine-1
▴ 10
0
votes
4
replies
354
views
How to reduce the variation of CIBERSORTx results?
CIBERSORTx
deconcolution
5 hours ago by
feather-W
• 0
0
votes
1
reply
158
views
Job:
Consultant to update a Snakemake workflow with the new Kubernetes executor plugin for Snakemake 8
Kubernetes
DevOps
executor
AWS
Snakemake
updated 1 day ago by
Michael
54k • written 1 day ago by
jonrkarr
▴ 100
0
votes
2
replies
163
views
Bedmethyl file format
bedmethyl
methylation
updated 1 day ago by
GenoMax
141k • written 1 day ago by
njornet
▴ 20
0
votes
0
replies
117
views
sequence table for DADA2 chimera filtering
OTU
sequencetable
DADA2
1 day ago by
Ali
• 0
2
votes
4
replies
250
views
SnpEff annotates coding duplication as intronic?
snpeff
1 day ago by
kirill.zaslavsky
• 0
0
votes
2
replies
188
views
Calculating percentage of cells proliferating in single cell rna seq data
statistics
scRNA-seq
proliferation
1 day ago by
mropri
▴ 150
0
votes
1
reply
213
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
updated 19 hours ago by
bk11
★ 2.3k • written 1 day ago by
航太郎
• 0
5
votes
4
replies
2.8k
views
genefu for PAM50 prediction
RNA-Seq
breast cancer
subtyping
updated 1 day ago by
hamarillo
▴ 70 • written 5.6 years ago by
silviajserrano
▴ 50
3
votes
10
replies
560
views
Piping samtools to R
R
NGS
bash
samtools
1 day ago by
joe
▴ 500
116,460 results • Page
1 of 2330
Recent Votes
Answer: Assume "yes" as the answer to any prompts with bioconda
Answer: Assume "yes" as the answer to any prompts with bioconda
Comment: biomaRt error for different R version
Answer: What is the normalization status of metabric data?
Answer: Assume "yes" as the answer to any prompts with bioconda
Answer: Assume "yes" as the answer to any prompts with bioconda
Answer: biomaRt error for different R version
Recent Locations •
All
Stony Brook University, NY,
just now
United States,
just now
Netherlands,
1 minute ago
Slovakia,
1 minute ago
Belgium, Brussels,
1 minute ago
Spain,
3 minutes ago
Japan,
5 minutes ago
Recent Awards •
All
Scholar
to
GenoMax
141k
Popular Question
to
carlopecoraro2
★ 2.5k
Student
to
manaswiniparija3
▴ 40
Popular Question
to
tomas4482
▴ 390
Popular Question
to
vinayjrao
▴ 250
Scholar
to
Scooter
▴ 280
Popular Question
to
Yingying
• 0
Recent Replies
Answer: DEseq2
by
ATpoint
81k
The DESeq2 input is a numeric count matrix (or data.frame) with rows being genes/observations and columns being samples/cells/specimen. Ple…
Comment: How to add motifs in cellranger-arc reference?
by
Ehsan
• 0
Hi. Do you have any updates on what you ended up doing? I am encountering same issue, cannot really find a good TF motif database for zebra…
Comment: biomaRt error for different R version
by
manaswwm
▴ 490
Wonderful, and thanks for tagging Mike! For those who come back for this problem, the following seemed to work for me: Downgrading `dbply…
Answer: Assume "yes" as the answer to any prompts with bioconda
by
Juke34
8.5k
From my experience using `biocontainers` base container no need to set `yes` installation is done without any command prompt, otherwise as …
Comment: SLURM submission problem: Indexing the Reference Genome is not done in STAR
by
Dave Carlson
★ 1.7k
You're allocating 4 compute nodes (`#SBATCH -N 4`), but STAR can't actually make use of more than 1 compute node. You can increase the num…
Answer: Assume "yes" as the answer to any prompts with bioconda
by
Dave Carlson
★ 1.7k
```conda install -y bioconda::packageX conda-forge::packageY``` should do what you're looking for.
Comment: Supergnova stuck in tutorial
by
Murat
• 0
Hi GenoMax, Thank you for your advice. I sent an email to them and have already opened an issue on Github. Let see if there is any other so…
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
by
me
▴ 750
You can't. The data does not exist. UniProt only annotates where a lysine is know to be acetylated. There is no way that UniProt can know w…
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
by
Jacky
• 0
Yes, that's what I meant.
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
by
Jacky
• 0
I'm sorry, I didn't explain it clearly. Below are my operational steps: I enter 'Triticum aestivum' in the search box and perform a search.…
Comment: Indexing the Reference Genome is not done in STAR
by
n_navy
• 0
I add these parameters; #SBATCH -N 4 #SBATCH --tasks=1 #SBATCH -c 4 #SBATCH --time=24:00:00 But it keeps giving error
Comment: RNA seq differential expression analysis
by
rrehimi
• 0
Thanks! Could you please explain the DEseq2 method using Galaxy step by step? Input files?
Answer: Korean reference file
by
colindaven
6.3k
Is is this one - KOREF ? There might be multiple versions. https://www.ncbi.nlm.nih.gov/bioproject/PRJNA294231/ If it is, then take that…
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
by
me
▴ 750
The question is not quite clear? are you asking for wheat proteins in UniProtKB which contain a lysine amino-acid, where those lysine are *…
Comment: RNA seq differential expression analysis
by
seta
★ 1.9k
You should provide row count (without normalization) for doing DEG analysis by relevant tools such as, edgeR or DEseq.
Traffic: 2635 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6