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116,474 results • Page
1 of 2330
Sort: Rank
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Votes
Replies
0
votes
2
replies
264
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
2 hours ago by
航太郎
• 0
0
votes
0
replies
25
views
Spam:
Free Instagram Likes
Free
Likes
Instagram
3 hours ago by
seo2
0
0
votes
1
reply
111
views
Adding CB tag to bam file
samtools
bam
updated 4 hours ago by
swbarnes2
14k • written 5 hours ago by
Maria
• 0
11
votes
12
replies
588
views
Downloaded pdb's on rcsb.org
rcsb
pdb
updated 4 hours ago by
Ram
43k • written 10 hours ago by
iamsmor
• 0
795
votes
167
replies
141k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 12 weeks ago by
Biostar
2.6k • written 7.4 years ago by
Istvan Albert
100k
0
votes
0
replies
48
views
Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (without Blat)
mapping
6 hours ago by
rahu
• 0
0
votes
0
replies
54
views
create genewise sync file in popoolation
popoolation
updated 6 hours ago by
GenoMax
141k • written 7 hours ago by
N.Y.Wiyana-Hewage
• 0
0
votes
2
replies
167
views
python file for cpc2
cpc2.py
updated 7 hours ago by
Ram
43k • written 7 hours ago by
Ashok
• 0
0
votes
2
replies
168
views
error in CPC2
cpc
CPC2
coding-potential
updated 7 hours ago by
Ram
43k • written 7 hours ago by
Ashok
• 0
0
votes
1
reply
125
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
updated 5 hours ago by
GenoMax
141k • written 7 hours ago by
Ashok
• 0
2
votes
2
replies
274
views
How to compare the quality of assemblies
nextdenovo
assembly
hifiasm
pacbio
updated 11 hours ago by
shelkmike
★ 1.2k • written 18 hours ago by
kirillkirilenko
▴ 30
0
votes
0
replies
65
views
Variant Generation Using Longshot
long-reads
variant-calling
ONT
minion
longshot
updated 11 hours ago by
Ram
43k • written 11 hours ago by
samuelkalandarov2002
• 0
1
vote
1
reply
221
views
Problem with Mirdeep2 and Randfold output
mirdeep2
Randfold
11 hours ago by
otieno43
▴ 30
0
votes
1
reply
138
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
updated 11 hours ago by
Ram
43k • written 11 hours ago by
_quantum_girl_
▴ 10
0
votes
0
replies
69
views
traying to make a maf from an already annotated vcf
vcf2maf
VEP
maftools
updated 12 hours ago by
Ram
43k • written 12 hours ago by
Javier
• 0
1
vote
4
replies
571
views
What happened to Tombo Re-squiggle
Tombo
resquiggle
ONT
updated 12 hours ago by
Ram
43k • written 3 months ago by
turcoa1
• 0
0
votes
0
replies
69
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
12 hours ago by
enferdeflame
• 0
0
votes
0
replies
73
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
7 hours ago by
Chris
▴ 260
0
votes
0
replies
77
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 12 hours ago by
Ram
43k • written 14 hours ago by
carlopecoraro2
★ 2.5k
1
vote
9
replies
596
views
How can I retrieve wheat lysine non-acetylated sequences from the UniProt database?
UniProt
updated 14 hours ago by
Elisabeth Gasteiger
★ 2.4k • written 18 hours ago by
Jacky
• 0
0
votes
1
reply
164
views
10x VDJ (TCR/BCR) BAM to fastq
TCR
VDJ
BCR
10x
updated 14 hours ago by
GenoMax
141k • written 16 hours ago by
predeus
★ 1.9k
0
votes
1
reply
176
views
DEseq2
RNA-seq
DESeq2
updated 12 hours ago by
Ram
43k • written 17 hours ago by
rrehimi
• 0
0
votes
0
replies
81
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 12 hours ago by
Ram
43k • written 15 hours ago by
carlopecoraro2
★ 2.5k
4
votes
2
replies
234
views
Assume "yes" as the answer to any prompts with bioconda
docker
container
bioconda
updated 15 hours ago by
Juke34
8.5k • written 16 hours ago by
njornet
▴ 20
0
votes
0
replies
80
views
Tutorial:
DNA Methylation: Sequencing Techniques
WGBS
RRBS
16 hours ago by
Novogene
▴ 410
0
votes
1
reply
367
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree
microbiome
updated 12 hours ago by
Ram
43k • written 19 months ago by
Muhammad
• 0
3
votes
2
replies
244
views
Korean human genome reference file
GWAS
reference
imputation
updated 14 hours ago by
GenoMax
141k • written 18 hours ago by
SeoGyun
• 0
1
vote
4
replies
351
views
SLURM submission problem: Indexing the Reference Genome is not done in STAR
align
RNA-Seq
linux
STAR
updated 14 hours ago by
GenoMax
141k • written 18 hours ago by
n_navy
• 0
0
votes
3
replies
278
views
RNA seq differential expression analysis
RNA-seq
normalization
updated 4 hours ago by
swbarnes2
14k • written 18 hours ago by
rrehimi
• 0
0
votes
0
replies
85
views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau-score
tspex
updated 12 hours ago by
Ram
43k • written 19 hours ago by
bioinfo223
▴ 10
0
votes
0
replies
99
views
How to root an unrooted tree with a known root tree?
phylogenetics
rooting
R
19 hours ago by
P.
• 0
0
votes
0
replies
101
views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpEff
21 hours ago by
ekirsch
• 0
0
votes
1
reply
173
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
updated 2 hours ago by
cmdcolin
★ 3.8k • written 1 day ago by
renan.igor
• 0
1
vote
1
reply
196
views
Pediococcus acidilactici sequence analysis
BLAST
Gene-Ontology
updated 22 hours ago by
Ram
43k • written 1 day ago by
anasjamshed
▴ 120
3
votes
1
reply
557
views
What is the normalization status of metabric data?
metabric
normalization
microarray
cbioportal
updated 1 day ago by
etiennedanis
▴ 20 • written 19 months ago by
DareDevil
★ 4.3k
0
votes
0
replies
112
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
1 day ago by
synat.keam
▴ 100
0
votes
1
reply
203
views
assembly using CCS, CLR, CCS_CLR sequences together?
assembly
updated 1 day ago by
GenoMax
141k • written 1 day ago by
ycts
• 0
5
votes
4
replies
496
views
DEG analysis of RNA-seq data across multiple tissues and two conditions
RNA-seq
EdgeR
DEGs
DESeq2
7 hours ago by
BioinfGuru
★ 1.7k
1
vote
1
reply
228
views
Inconsistency in SNP detection pipelines for multi-sample analysis
vcf
bam
bcf
snps
updated 1 day ago by
LChart
3.9k • written 1 day ago by
George
▴ 10
0
votes
3
replies
355
views
Per base sequence content failed miserably
fastqc
sequence
trimmomatic
NGS
assembly
updated 8 hours ago by
GenoMax
141k • written 1 day ago by
Kai Xin
• 0
1
vote
1
reply
185
views
Retrieve a % coverage for each transcript
RNA-seq
updated 1 day ago by
Ram
43k • written 1 day ago by
jammydodger123456
▴ 40
0
votes
1
reply
307
views
Pruning Phylogenetic Trees and Bootstrap Values
phylogenetics
bootstrap
updated 1 day ago by
Klaus S
▴ 150 • written 6 days ago by
Zeng Hao
▴ 40
0
votes
2
replies
293
views
How can I solve this error?
metal
23 hours ago by
22211020193
• 0
0
votes
0
replies
121
views
Struggling to lift genome builds
PLINK
liftover
GWAS
updated 1 day ago by
GenoMax
141k • written 1 day ago by
srimmer
• 0
1
vote
2
replies
225
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 1 day ago by
Ram
43k • written 1 day ago by
aniigodwinn
• 0
2
votes
3
replies
331
views
Sheep reference genome remapping coordinates
reference
remap
sheep
coordinates
genome
14 hours ago by
valentinatsar
• 0
1
vote
3
replies
233
views
Editing Human Reference Genome by adding a CDS
gff
agat
transcriptome
updated 1 day ago by
Michael
54k • written 1 day ago by
LDT
▴ 330
2
votes
10
replies
570
views
Questions about a bug when transferring cram file to bam file
sequence
samtools
bcftools
updated 11 hours ago by
GenoMax
141k • written 1 day ago by
me
• 0
2
votes
2
replies
333
views
differential gene expression analysis when not all samples have an untreated counterpart
differential-expression
edgeR
11 hours ago by
nhaus
▴ 300
0
votes
0
replies
242
views
Looking for an explanation as to what the Peak Score is from HOMER, not finding any answers on Biostars yet
Homer
ATAC-seq
1 day ago by
Ronin
• 0
116,474 results • Page
1 of 2330
Recent Votes
Answer: Korean reference file
Comment: Korean human genome reference file
C: samtools sort bam file
A: samtools sort bam file
Answer: Downloaded pdb's on rcsb.org
Comment: Downloaded pdb's on rcsb.org
Comment: Downloaded pdb's on rcsb.org
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Recent Replies
Comment: Load a full GFF3 into annotation track using arrow (Apollo)
by
cmdcolin
★ 3.8k
Hi there, I let a developer know of this thread and they said they can check it out next week. Feel free to post to the https://github.com/…
Comment: How to get the reference panel for UKBB
by
航太郎
• 0
Thanks for your guide!
Comment: Removing duplicates
by
joe
▴ 500
I'd try those OP @samuel recommends My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis
by
swbarnes2
14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Answer: Adding CB tag to bam file
by
swbarnes2
14k
Shouldn't you use PicardTools for this?
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
Sure. Or, one could do: bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org
by
iamsmor
• 0
thank you so much
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
This may be the best option. Get the PDB ID's $ ./get.sh "Mus musculus" AHR 4M4X 5NJ8 5V0L 8H77 Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
It gives you the first 25 results though. I'll see if I can change that. EDIT: I've updated that number to 250. I'm hoping you won't need …
Comment: Downloaded pdb's on rcsb.org
by
iamsmor
• 0
thank you very much
Answer: Downloaded pdb's on rcsb.org
by
Ram
43k
I'm going to build off of OP's query and give them a simple script: ```bash organism=$(echo $1 | sed 's/ /%20/g') gene=$2 curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool
by
GenoMax
141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads? Genome (can be download…
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
That's how they seem to have written their query - automating that is a bit of a pain though as it takes a crazy JSON as input.
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
You can use the "Advanced query" builder (https://www.rcsb.org/search/advanced ) to create a query like: https://www.rcsb.org/search?requ…
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