Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
116,560 results • Page
1 of 2332
Sort: Rank
Rank
Views
Votes
Replies
2
votes
8
replies
229
views
Redirection of Duplicate PMIDs
pubmed
pmid
updated just now by
LauferVA
4.2k • written 14 hours ago by
dominickd
• 0
2
votes
2
replies
223
views
How to convert plink files to Hapmap Format
GWAS
Plink
5 minutes ago by
Sofia
• 0
0
votes
0
replies
8
views
The concept of co-occurrence network structure
co-occurence
microbiome
network
31 minutes ago by
ohtang7
▴ 40
0
votes
0
replies
14
views
How to merge UMAP coordinates with the concatenated loom files in anndata object
RNA-velocity
scanpy
loomfile
scvelo
python
24 minutes ago by
Kash
▴ 110
2
votes
0
replies
28
views
News:
Interested in Spatial Omics?
Bioconductor
Spatial-Omics
Spatial-Transcriptomics
updated 55 minutes ago by
Ram
43k • written 1 hour ago by
carlopecoraro2
★ 2.5k
2
votes
2
replies
314
views
Using vg gamsort with naive sorting algorithm
gamsort
vg
updated 2 hours ago by
Pierre Lindenbaum
161k • written 8 months ago by
AshleeThomson
▴ 80
0
votes
1
reply
50
views
Plot DNA methylation level of DMR on the basis of certain genes
rrbs
methylkit
updated 2 hours ago by
GenoMax
141k • written 2 hours ago by
Srinka
▴ 20
7
votes
5
replies
4.6k
views
ISCN annotation for SV/CN VCF files
SV
written 7 months ago by
a.beggs
▴ 50
0
votes
4
replies
97
views
Should I remove unlocalized scaffols in reference genome before alignment?
qualimap
alignment
minimap2
GRCh38
assembly
updated 1 hour ago by
GenoMax
141k • written 3 hours ago by
njornet
▴ 20
5
votes
3
replies
505
views
How to compare the quality of assemblies
nextdenovo
assembly
hifiasm
pacbio
updated 3 hours ago by
colindaven
6.4k • written 5 days ago by
kirillkirilenko
▴ 40
0
votes
0
replies
32
views
Software to calculate RSCU, ENC other than codonw
rscu
codonw
updated 58 minutes ago by
Ram
43k • written 4 hours ago by
SHREYA
• 0
0
votes
3
replies
302
views
How to identify gaps in a genome?
awk
seqkit
assembly
fasta
genome
updated 4 hours ago by
colindaven
6.4k • written 8 days ago by
rj.rezwan
• 0
0
votes
0
replies
35
views
Merging replicates from Encode project
CHIP-seq
encode
4 hours ago by
Nurken
• 0
1
vote
3
replies
131
views
Filter BAM to keep only alignments at an interval, ignoring reads spliced over
samtools
bam
splicing
5 hours ago by
WouterDeCoster
47k
0
votes
3
replies
123
views
Help for coding: Trinity for differential gene expression studies
Gene
updated 3 hours ago by
mchour
• 0 • written 5 hours ago by
rhossen
• 0
795
votes
167
replies
141k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 3 months ago by
Biostar
2.7k • written 7.4 years ago by
Istvan Albert
100k
0
votes
1
reply
90
views
WGCNA preservation analysis
WGCNA
preservation
updated 5 hours ago by
Michael
54k • written 7 hours ago by
michael.flower.14
▴ 180
0
votes
2
replies
100
views
some error in building kraken2 database
metagenome
kraken2
updated 52 minutes ago by
Ram
43k • written 6 hours ago by
Art1ess
• 0
0
votes
1
reply
50
views
Subset Seurat object from Xenium spatial data
Seurat
Xenium
Spatial
updated 45 minutes ago by
bk11
★ 2.3k • written 6 hours ago by
Susmita Mandal
▴ 110
0
votes
1
reply
75
views
Plots for DNA methylation data
plots
DNA
methylation
updated 4 hours ago by
GenoMax
141k • written 7 hours ago by
sarahawan92
▴ 10
0
votes
3
replies
435
views
python file for coding potential calculator
cpc2.py
updated 8 hours ago by
atharvakarkare14
▴ 10 • written 4 days ago by
Ashok
• 0
1
vote
1
reply
94
views
Failed kmer content
kmer
illumina
ngs
updated 58 minutes ago by
Ram
43k • written 9 hours ago by
Kasturi
• 0
0
votes
1
reply
99
views
Heatmap and rna-seq
RNA-Seq
Heatmap
and
updated 7 hours ago by
Basti
★ 2.0k • written 10 hours ago by
qudrat.nii
▴ 10
0
votes
0
replies
73
views
Forum:
Improvement on automatic annotation of single-cell RNA-seq data from the literature using LLM
annotation
scRNA
llm
11 hours ago by
yxwucq
• 0
0
votes
0
replies
55
views
Seurat merge and batch correction
Seurat
12 hours ago by
sooni
▴ 20
0
votes
0
replies
42
views
How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
HMMcopy
Copy-number-analysis
R
updated 23 minutes ago by
Ram
43k • written 12 hours ago by
SSSJec
• 0
0
votes
5
replies
201
views
How to slice a gvcf file with tabix?
Tabix
bed
gvcf
updated 16 hours ago by
Pierre Lindenbaum
161k • written 19 hours ago by
Sd
• 0
0
votes
2
replies
130
views
Help with Base quality Score Recalibration (BQSR) using GATK
GATK
BQSR
19 hours ago by
sainavyav22
• 0
0
votes
1
reply
100
views
Identification of Transgene insertion sites
Transgene
Whole-Genome-Sequencing
transgene-sites
updated 20 hours ago by
Ram
43k • written 20 hours ago by
Cameron.walker9900
• 0
0
votes
8
replies
231
views
Error in cnetplot enrichplot package
R
updated 19 hours ago by
Ram
43k • written 21 hours ago by
Farhad
• 0
1
vote
4
replies
164
views
Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
FASTQ
updated 20 hours ago by
Mensur Dlakic
★ 27k • written 21 hours ago by
Κοσμάς
• 0
0
votes
0
replies
73
views
Pairwise alignment and Ka/Ks computation
Pairwise-Alignment
Genomics
Ka-Ks
updated 20 hours ago by
Ram
43k • written 21 hours ago by
maxime.policarpo
▴ 200
3
votes
3
replies
138
views
Genbank vs SRA
ncbi
genbank
genomics
sra
updated 20 hours ago by
Mensur Dlakic
★ 27k • written 21 hours ago by
c_u
▴ 520
0
votes
0
replies
61
views
Analysis of the gene family of a genome.
Genome
gene-family
updated 21 hours ago by
Ram
43k • written 21 hours ago by
sansan_96
▴ 80
0
votes
2
replies
118
views
Should I use unpaired reads from trimmomatic
RNA-seq
QC
Trimmomatic
19 hours ago by
dxj294
• 0
0
votes
0
replies
66
views
File with NCBI summary or Uniprot description
annotation
visualisation
NCBI
Uniprot
RNA
updated 50 minutes ago by
Ram
43k • written 21 hours ago by
Amélie
• 0
0
votes
0
replies
98
views
Meta analysis of two GWAS summary statistics: one study is case-control and the other is quantitative
GWAS
Meta-analysis
updated 21 hours ago by
Ram
43k • written 21 hours ago by
Oak
▴ 10
1
vote
3
replies
2.4k
views
Problem to remove subset of patients with plink
plink
PED
updated 18 hours ago by
chrchang523
10k • written 6.1 years ago by
Ginevra
▴ 10
2
votes
1
reply
109
views
Gene set enrichment analysis differences between 2020 and 2024
Gene-ontology
updated 23 hours ago by
ATpoint
81k • written 23 hours ago by
catherine.teyssier
• 0
2
votes
3
replies
157
views
from row count to tpm
tpm
row-count
normalization
8 hours ago by
michelafrancesconi9
▴ 20
0
votes
0
replies
69
views
Blasting two protein sequences vs two nucleotide sequences
gene-hunting
blast
updated 23 hours ago by
GenoMax
141k • written 23 hours ago by
Abeer
• 0
1
vote
4
replies
167
views
Downsampling fastq file
downsample
fastq
updated 23 hours ago by
Ram
43k • written 1 day ago by
marco.barr
▴ 80
2
votes
3
replies
295
views
How to establish haplotype-specific gene expression levels
RNA-seq
Haplotype
updated 1 day ago by
dsull
★ 5.8k • written 13 days ago by
javanokendo
▴ 60
0
votes
1
reply
109
views
tbtool
tbtool
updated 23 hours ago by
Ram
43k • written 1 day ago by
Raman
• 0
0
votes
2
replies
161
views
Low mapping rate with Salmon
RNA-seq
Salmon
Quantification
updated 22 hours ago by
i.sudbery
19k • written 1 day ago by
Patadu94
• 0
3
votes
3
replies
182
views
Getting the nucleotide sequence of proteins, having their UniProt IDs
Nucleotide
Genomic
Sequence
Uniprot
Proteins
updated 1 day ago by
GenoMax
141k • written 1 day ago by
Mariana
▴ 10
0
votes
2
replies
134
views
clustalo - align milions of short seq, memory issue
memory
clustalo
updated 21 hours ago by
Mensur Dlakic
★ 27k • written 1 day ago by
emmanouil.a
▴ 120
0
votes
1
reply
103
views
Displaced fragment length distribution in ATAC-seq
ATAC-seq
nucleosome
fragment
updated 1 day ago by
ATpoint
81k • written 1 day ago by
enanoide
• 0
0
votes
0
replies
74
views
Help with finding conferences in immuno-informatics/virology
virology
conferences
immunology
1 day ago by
manaswwm
▴ 490
3
votes
3
replies
702
views
KissDE and batch effect
kissDE
kissplice
1 day ago by
david.b.rombaut
▴ 10
116,560 results • Page
1 of 2332
Recent Votes
Answer: How to convert plink files to Hapmap Format
Answer: How to convert plink files to Hapmap Format
Comment: Redirection of Duplicate PMIDs
Comment: Failed kmer content
Using vg gamsort with naive sorting algorithm
Answer: Using vg gamsort with naive sorting algorithm
Interested in Spatial Omics?
Recent Locations •
All
Morocco,
2 minutes ago
Kansas City,
2 minutes ago
United States,
2 minutes ago
United States,
3 minutes ago
United States,
3 minutes ago
United States,
5 minutes ago
Portugal,
5 minutes ago
Recent Awards •
All
Popular Question
to
Kash
▴ 110
Scholar
to
GenoMax
141k
Scholar
to
anovak
▴ 120
Popular Question
to
pfee418
▴ 10
Popular Question
to
sarahmanderni
▴ 100
Popular Question
to
Michael
54k
Popular Question
to
michael.flower.14
▴ 180
Recent Replies
Comment: Subset Seurat object from Xenium spatial data
by
bk11
★ 2.3k
For subsetting a sample, you can do something like this- Idents(seuratObj) <- "orig.ident" subj1 <- c("subject_1") subj1_seur…
Comment: Redirection of Duplicate PMIDs
by
LauferVA
4.2k
Ok! I have a recommendation. I'll submit it as an answer, pending your feedback. vincent
Comment: DYH17 Structure Prediction
by
anasjamshed
▴ 120
In modeller we need to use templates as well.so 63% is acceptable
Comment: DYH17 Structure Prediction
by
Ram
43k
Mensur said > The latter option assumes you know how to use Modeller Do you know how to use Modeller? I vaguely recall there being a mini…
Comment: Should I remove unlocalized scaffols in reference genome before alignment?
by
GenoMax
141k
OP is working with long reads so the chances of reads aligning to unlocalized scaffolds are relatively small. Doing some testing may be suf…
Comment: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
by
ATpoint
81k
I personally think that comparing the same peak between conditions is meaningful and comparing peaks within the same sample is not.
Comment: Should I remove unlocalized scaffols in reference genome before alignment?
by
ATpoint
81k
These regions are present in the genome and removing them might incorrectly redirect alignments to known genes. I don't see why you would r…
Comment: Should I remove unlocalized scaffols in reference genome before alignment?
by
njornet
▴ 20
Ok thank you! Do you know if there is an easy way of doing so with ncbi-genome-download or I need to use another tool?
Comment: Using vg gamsort with naive sorting algorithm
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: Redirection of Duplicate PMIDs
by
dominickd
• 0
The scope is all publications related to grants from an NIH award program. There are currently ~120k publications in total (about a few hun…
Answer: Using vg gamsort with naive sorting algorithm
by
anovak
▴ 120
The `-d` sorting mode does the entire sort in memory, so it will only work if you have enough memory to load your whole GAM file. To fin…
Comment: Redirection of Duplicate PMIDs
by
dominickd
• 0
I have a list of PMIDs for publications linked to a list of grants, exported from NIH RePORTER.
Comment: Plot DNA methylation level of DMR on the basis of certain genes
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: Should I remove unlocalized scaffols in reference genome before alignment?
by
GenoMax
141k
Yes you can remove those if you are only interested in annotated genes.
Comment: Help for coding: Trinity for differential gene expression studies
by
mchour
• 0
[This could help][1] [1]: https://github.com/trinityrnaseq/RNASeq_Trinity_Tuxedo_Workshop/wiki/Trinity-De-novo-Transcriptome-Assembly-W…
Traffic: 3314 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6