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Answer: python file for coding potential calculator
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Download the CPC2 tool supported by python 3 from here [https://github.com/gao-lab/CPC2_standalone/releases/tag/v1.0.1][1].
Then follow …
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let me know the scope and scale of the request (e.g. I need to do this for every record in Pubmed) and can help
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I was able to come up with a workaround using the requests library:
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Thanks for you answer! Actually I have already filtered my peak according to blacklist by bedtools. You mean it's meaningless to compare on…
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More than likely not since the database query seems to work for the redirected PMID but not the original.
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Blast showed PDB: 8J07_n9(human) as best template with 62.99%.
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Then what is the best way to do slicing for 1Mb windows? Doing `--intervals` in the GenomicsDBImport?
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> What is your suggestion to run GenomicsDBImport efficiently?
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I want to run gatk `GenomicsDBImport` tool to build a GenomicsDB. I want to slice it to reduce the computation time since I have 1300 gvcf …
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Show us the exact call to `cnetplot()` with a sample of all input parameters. Did you compare notes with your friend?
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why would you need to slice a gvcf file ? all the tools in gatk can use a BED / interval / chromosome to narrow the analysis
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I check dataframe it has more than 2 columns
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