updated 1 hour ago by
ATpoint
81k
•
written 2 days ago by
arriyaz.nstu
▴
30
0
votes
1
reply
182
views
2
votes
2
replies
53
views
0
votes
0
replies
25
views
4
votes
4
replies
94
views
1
vote
2
replies
52
views
updated 28 minutes ago by
Pierre Lindenbaum
161k
•
written 3 hours ago by
Bikram Kumar
•
0
795
votes
167
replies
141k
views
109 follow
updated 12 weeks ago by
Biostar
2.6k
•
written 7.4 years ago by
Istvan Albert
100k
0
votes
1
reply
199
views
updated 3 hours ago by
andres.firrincieli
3.6k
•
written 3 days ago by
Milly
•
0
0
votes
2
replies
91
views
0
votes
2
replies
117
views
4 hours ago by
orzrzlyo
▴
20
0
votes
1
reply
92
views
0
votes
1
reply
85
views
0
votes
1
reply
113
views
updated 13 hours ago by
LChart
3.9k
•
written 16 hours ago by
leranwangcs
▴
120
1
vote
3
replies
321
views
updated 14 hours ago by
LChart
3.9k
•
written 1 day ago by
leranwangcs
▴
120
0
votes
1
reply
81
views
0
votes
1
reply
106
views
1
vote
5
replies
239
views
16 hours ago by
shpak.max
▴
50
0
votes
1
reply
128
views
updated 17 hours ago by
Ram
43k
•
written 18 hours ago by
michelle.swarovski
•
0
0
votes
1
reply
105
views
updated 18 hours ago by
GenoMax
141k
•
written 18 hours ago by
haiying.kong
▴
360
0
votes
2
replies
153
views
1 hour ago by
matteo.levorato
•
0
1
vote
0
replies
74
views
0
votes
1
reply
108
views
updated 19 hours ago by
Pierre Lindenbaum
161k
•
written 20 hours ago by
Sd
•
0
0
votes
0
replies
67
views
0
votes
0
replies
79
views
1
vote
2
replies
134
views
2
votes
0
replies
105
views
2
votes
1
reply
166
views
4
votes
6
replies
296
views
updated 3 hours ago by
b.contreras.moreira
▴
150
•
written 1 day ago by
Begonia_pavonina
▴
150
3
votes
4
replies
262
views
updated 20 hours ago by
Buffo
★
2.4k
•
written 1 day ago by
manaswiniparija3
▴
20
2
votes
0
replies
127
views
1
vote
1
reply
121
views
1
vote
0
replies
90
views
1 day ago by
ferdinand
▴
10
0
votes
0
replies
86
views
1 day ago by
Balazs Horvath
▴
10
0
votes
0
replies
90
views
2
votes
4
replies
278
views
0
votes
0
replies
110
views
1 day ago by
quentinperriere
•
0
0
votes
1
reply
131
views
0
votes
2
replies
196
views
7
votes
7
replies
656
views
updated 18 hours ago by
Dunois
★
2.5k
•
written 1 day ago by
AdviceSeeker
•
0
0
votes
0
replies
126
views
0
votes
1
reply
175
views
1
vote
3
replies
368
views
updated 2 days ago by
josev.die
▴
60
•
written 14 days ago by
Begonia_pavonina
▴
150
0
votes
0
replies
157
views
0
votes
0
replies
131
views
2 days ago by
carlopecoraro2
★
2.5k
1
vote
3
replies
236
views
updated 1 hour ago by
ATpoint
81k
•
written 2 days ago by
naveedhasan2000
•
0
1
vote
2
replies
259
views
updated 16 hours ago by
Istvan Albert
100k
•
written 2 days ago by
Jiang
•
0
85
votes
23
replies
23k
views
17 follow
Tutorial:
Gene Set Enrichment Analysis
updated 2 days ago by
Gordon
•
0
•
written 3.5 years ago by
Hamid Ghaedi
3.2k
2
votes
3
replies
308
views
2
votes
1
reply
258
views
updated 2 days ago by
Alex Reynolds
35k
•
written 2 days ago by
natami
▴
10
1
vote
1
reply
454
views
0
votes
0
replies
176
views
Recent Votes
Recent Locations •
All
India, just now
Galway, Ireland, just now
Bologna, 9 minutes ago
France, 10 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 11 minutes ago
Hinxton, UK, 11 minutes ago
Spain, 11 minutes ago
Recent Awards •
All
Popular Question to
predeus
★
1.9k
Teacher to
Pierre Lindenbaum
161k
Popular Question to
Damianos P. Melidis
▴
40
Popular Question to
kwanghoon
▴
20
Scholar to
b.contreras.moreira
▴
150
Popular Question to
pablo
▴
300
Recent Replies
Comment: Where to find the homopolymer regions bed file for Hg002 genome?
by
Pierre Lindenbaum
161k
cross-posted https://bioinformatics.stackexchange.com/questions/22401
Comment: Tumour purity and ploidy estimation
by
bp22
▴
60
Hi Llyod98,
This issue is still unresolved and I have not been able to find a tool or solution for purity and ploidy estimation when ther…
Comment: Ensembl gene id conversion
by
ATpoint
81k
Can you add some examples. It is hard to debug textual descriptions.
Answer: Which experiments generate Position Frequency Matrix?
by
ATpoint
81k
Yes, ChIP-seq or similar methods that assay the DNA binding of a protein. But for a reliable matrix you don't need one or two but many data…
Comment: Statistical Advice Needed for RNAseq Data Analysis
by
ATpoint
81k
> ensuring it's not merely a product of random chance
If your approach of getting DEGs is a proper and sound one (e.g. DESeq2 or limma) th…
Comment: Can I compare kallisto counts from samples with different amount of reads?
by
ATpoint
81k
Unequal numbers of reads are normal, that is why normalization is needed. If you want to do simple analysis such as number of detected gene…
Comment: Error in edgeR/Deseq2 Analysis
by
ATpoint
81k
Please ask at https://help.galaxyproject.org/ which is the Galaxy help forum.
Comment: RNAseq 1 control 2 different treatment
by
matteo.levorato
•
0
yes, this is what I did. However, since my treatments are very similar each other, when I check upregulated genes in one treatment, they ar…
Comment: I am new to single cell analysis. Can RNA velocity (spliced/unspliced) be calcul
by
Spring
•
0
Thank you for the kind guidance!
Answer: I am new to single cell analysis. Can RNA velocity (spliced/unspliced) be calcul
by
ATpoint
81k
No, you either have the spliced and unspliced counts available that you need, or you need the fastq files to generate them. Before you dive…
Comment: Convert GVF to VCF
by
george-hall-ucl
•
0
This has moved - it is now at: [https://github.com/Ensembl/ensembl-variation/blob/main/scripts/misc/release/gvf2vcf.pl][1].
[1]: https:…
Comment: I'm new to cell ranger. Can single cells prepared with a protocol other than the
by
Spring
•
0
Thank you very much!
Comment: I'm new to cell ranger. Can single cells prepared with a protocol other than the
by
Spring
•
0
Thank you so much! If the 10x Chromium protocol is not used, should the processing be done with HISAT2, FeatureCounts, and so on?
Comment: I'm new to cell ranger. Can single cells prepared with a protocol other than the
by
fracarb8
★
1.6k
For the paper, they used the `indrop` pipeline (https://github.com/indrops/indrops), and you should have a look at it, and try to run with …
Traffic: 2384 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6