2 hours ago by
Matteo Ungaro
▴
100
0
votes
2
replies
71
views
0
votes
1
reply
61
views
updated 4 hours ago by
Pierre Lindenbaum
161k
•
written 6 hours ago by
analyst
▴
20
0
votes
1
reply
131
views
updated 7 hours ago by
Gordon Smyth
★
7.0k
•
written 17 hours ago by
Bioinformatician
•
0
1
vote
0
replies
170
views
0
votes
1
reply
175
views
795
votes
167
replies
141k
views
109 follow
updated 12 weeks ago by
Biostar
2.6k
•
written 7.4 years ago by
Istvan Albert
100k
2
votes
3
replies
170
views
0
votes
1
reply
180
views
updated 17 hours ago by
GenoMax
141k
•
written 19 hours ago by
rebecca.calvo
•
0
0
votes
0
replies
117
views
0
votes
3
replies
319
views
1
vote
4
replies
416
views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
updated 18 hours ago by
Matthias Zepper
4.5k
•
written 21 hours ago by
Ann
★
2.4k
0
votes
0
replies
104
views
0
votes
0
replies
108
views
22 hours ago by
Nitin
•
0
1
vote
5
replies
426
views
0
votes
0
replies
114
views
0
votes
0
replies
104
views
22 hours ago by
Rodolfo Adrián
•
0
3
votes
8
replies
1.1k
views
0
votes
1
reply
176
views
0
votes
0
replies
122
views
1
vote
5
replies
589
views
updated 1 day ago by
BioinfGuru
★
1.7k
•
written 2 days ago by
rrehimi
•
0
0
votes
0
replies
105
views
1 day ago by
DanielEB_fisk
▴
20
0
votes
1
reply
203
views
4
votes
9
replies
2.6k
views
Tool:
CANEapp, a user-friendly application for automated next generation transcriptomic data analysis
written 8.2 years ago by
dvelmeshev
•
0
2
votes
7
replies
5.2k
views
6 follow
updated 1 day ago by
ATpoint
81k
•
written 7.1 years ago by
boymin2020
▴
80
5
votes
13
replies
842
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
updated 2 hours ago by
ATpoint
81k
•
written 1 day ago by
BioinfGuru
★
1.7k
1
vote
1
reply
341
views
1 day ago by
Dinmukhamed
•
0
0
votes
0
replies
126
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
Dinmukhamed
•
0
0
votes
0
replies
127
views
1
vote
2
replies
404
views
updated 1 day ago by
Pierre Lindenbaum
161k
•
written 1 day ago by
rahu
•
0
0
votes
0
replies
133
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
atharvakarkare14
▴
10
7
votes
3
replies
2.7k
views
updated 1 day ago by
colindaven
6.4k
•
written 15 months ago by
Dr.Animo
▴
130
3
votes
3
replies
359
views
0
votes
2
replies
442
views
0
votes
3
replies
386
views
11
votes
12
replies
822
views
0
votes
0
replies
146
views
updated 1 day ago by
GenoMax
141k
•
written 1 day ago by
N.Y.Wiyana-Hewage
•
0
0
votes
2
replies
306
views
0
votes
2
replies
296
views
1 day ago by
Ashok
•
0
0
votes
2
replies
332
views
1 day ago by
Ashok
•
0
5
votes
2
replies
396
views
updated 2 days ago by
shelkmike
★
1.2k
•
written 2 days ago by
kirillkirilenko
▴
40
0
votes
0
replies
151
views
updated 2 days ago by
Ram
43k
•
written 2 days ago by
samuelkalandarov2002
•
0
1
vote
1
reply
307
views
0
votes
2
replies
351
views
0
votes
0
replies
158
views
1
vote
4
replies
636
views
0
votes
0
replies
152
views
2 days ago by
enferdeflame
•
0
0
votes
0
replies
165
views
0
votes
0
replies
166
views
updated 2 days ago by
Ram
43k
•
written 2 days ago by
carlopecoraro2
★
2.5k
3
votes
9
replies
712
views
updated 2 days ago by
Elisabeth Gasteiger
★
2.4k
•
written 2 days ago by
Jacky
•
0
Recent Votes
Recent Locations •
All
Finland, 4 minutes ago
United States, 6 minutes ago
South Korea, 7 minutes ago
United States, 9 minutes ago
Hong Kong, 12 minutes ago
Estonia, 12 minutes ago
San Francisco, 12 minutes ago
Recent Awards •
All
Popular Question to
Rodolfo Adrián
•
0
Scholar to
damian.szk
▴
70
Popular Question to
alphaflylizard
•
0
Popular Question to
Shicheng Guo
★
9.4k
Popular Question to
DanielEB_fisk
▴
20
Recent Replies
Comment: MEGA Analysis Issue on High-Performance Computer
by
5heikki
11k
16GB of RAM is nothing. My phone has that. My server has 1TB of RAM, and even that isn't always enough
Comment: MEGA Analysis Issue on High-Performance Computer
by
GenoMax
141k
I don't think MEGA supports GPU's: https://www.megasoftware.net/web_help_11/Part_I_Getting_Started/Installing_MEGA/System_Requirements.htm
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
ATpoint
81k
You can, if you use RStudio via Docker, for example `bioconductor/bioconductor_docker`. I currently manage many different projects with thi…
Comment: bam merging for archaic samples
by
Matteo Ungaro
▴
100
@Pierre Lindenbaum I see. So, I can actually manipulate just one single RG tag at the time with `samtools`? Which flag should I use, or sho…
Comment: bam merging for archaic samples
by
Pierre Lindenbaum
161k
RG tag "L9302" is missing the the BAM header. You should have something like this in the BAM header
```
@RG ID:L9302 SM:L9302
```
may be…
Answer: Filtering sam or bam file with maximum matching region
by
Pierre Lindenbaum
161k
> . Is there any way to find through sam or bam file that which chromosomal position are maximum reads aligning to?
samtools depth i…
Comment: Calculate Radius of Gyration [python 3]
by
ndm1096
•
0
Hello Franco. I am very much new with bioinformatics but I have been tasked with studying the radius of gyration of a timeseries of a prote…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
BioinfGuru
★
1.7k
That makes a lot more sense. Thank you.
Answer: Removing Illumina microarray probes with no expression HumanHT-12v4
by
Gordon Smyth
★
7.0k
Type
```
help("read.idat")
```
and read the example at the bottom of the page, which shows you how to set the `other$Detection` component o…
Comment: Free/open source 23andme-like analysis
by
swbarnes2
14k
Accurately assessing a few QC metrics is trivially easy.
Assessing the significance of variants in a clinically responsible way is really…
Comment: Cellranger count error: Input FASTQ file ended prematurely
by
swbarnes2
14k
If _1 and _2 really are the same library, you should rename the fastqs, or make symlinks, such that they have the same sample name, but dif…
Comment: Cellranger count error: Input FASTQ file ended prematurely
by
ATpoint
81k
Just delete the index read files. They just take up space and will never be used.
Comment: Adding CB tag to bam file
by
swbarnes2
14k
Yes. Why wouldn't you use, say, AddOrReplaceReadsGroups?
Comment: Ciriquant not configuring hisat2 indexed files
by
Atul K.
•
0
Thank you. Decreased the threads to 2 (changed the threads: 2 in the config file; but it was somehow using 4). It did run for sometime but …
Answer: GTF file from Stringtie to R Studio for either Ballgown or DESeq2
by
Ram
43k
See this section on how to use tximport to import StringTie output for DESeq2 processing: https://bioconductor.org/packages/devel/bioc/vign…
Traffic: 1590 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6