0
votes
5
replies
565
views
0
votes
2
replies
25
views
0
votes
1
reply
20
views
updated 2 minutes ago by
bk11
★
2.3k
•
written 44 minutes ago by
alphaflylizard
•
0
2
votes
3
replies
64
views
0
votes
2
replies
70
views
0
votes
1
reply
43
views
updated 1 hour ago by
Pierre Lindenbaum
161k
•
written 2 hours ago by
Lada
▴
30
3
votes
10
replies
315
views
3
votes
7
replies
342
views
0
votes
0
replies
28
views
3 hours ago by
ohtang7
▴
40
0
votes
0
replies
37
views
2
votes
0
replies
47
views
updated 4 hours ago by
Ram
43k
•
written 4 hours ago by
carlopecoraro2
★
2.5k
795
votes
167
replies
141k
views
109 follow
updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
2
votes
2
replies
350
views
updated 5 hours ago by
Pierre Lindenbaum
161k
•
written 8 months ago by
AshleeThomson
▴
80
0
votes
1
reply
75
views
8
votes
5
replies
4.6k
views
0
votes
4
replies
158
views
5
votes
3
replies
518
views
updated 7 hours ago by
colindaven
6.4k
•
written 5 days ago by
kirillkirilenko
▴
40
0
votes
0
replies
40
views
0
votes
3
replies
312
views
0
votes
0
replies
48
views
1
vote
3
replies
142
views
0
votes
3
replies
143
views
1
vote
1
reply
104
views
updated 9 hours ago by
Michael
54k
•
written 10 hours ago by
michael.flower.14
▴
180
0
votes
2
replies
112
views
0
votes
1
reply
78
views
updated 4 hours ago by
bk11
★
2.3k
•
written 10 hours ago by
Susmita Mandal
▴
110
0
votes
1
reply
83
views
updated 7 hours ago by
GenoMax
141k
•
written 11 hours ago by
sarahawan92
▴
10
0
votes
3
replies
442
views
updated 11 hours ago by
atharvakarkare14
▴
10
•
written 5 days ago by
Ashok
•
0
1
vote
1
reply
114
views
0
votes
1
reply
108
views
updated 11 hours ago by
Basti
★
2.0k
•
written 13 hours ago by
qudrat.nii
▴
10
0
votes
0
replies
80
views
Forum:
Improvement on automatic annotation of single-cell RNA-seq data from the literature using LLM
14 hours ago by
yxwucq
•
0
0
votes
0
replies
64
views
0
votes
0
replies
48
views
0
votes
5
replies
205
views
updated 19 hours ago by
Pierre Lindenbaum
161k
•
written 22 hours ago by
Sd
•
0
0
votes
2
replies
135
views
22 hours ago by
sainavyav22
•
0
0
votes
1
reply
105
views
updated 23 hours ago by
Ram
43k
•
written 23 hours ago by
Cameron.walker9900
•
0
0
votes
8
replies
238
views
1
vote
4
replies
168
views
updated 1 day ago by
Mensur Dlakic
★
27k
•
written 1 day ago by
Κοσμάς
•
0
0
votes
0
replies
79
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
maxime.policarpo
▴
200
3
votes
3
replies
143
views
0
votes
0
replies
66
views
0
votes
2
replies
125
views
23 hours ago by
dxj294
•
0
0
votes
0
replies
73
views
0
votes
0
replies
110
views
1
vote
3
replies
2.4k
views
updated 22 hours ago by
chrchang523
10k
•
written 6.1 years ago by
Ginevra
▴
10
2
votes
1
reply
113
views
updated 1 day ago by
ATpoint
81k
•
written 1 day ago by
catherine.teyssier
•
0
2
votes
3
replies
164
views
11 hours ago by
michelafrancesconi9
▴
20
0
votes
0
replies
73
views
1
vote
4
replies
173
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
marco.barr
▴
80
2
votes
3
replies
300
views
updated 1 day ago by
dsull
★
5.8k
•
written 14 days ago by
javanokendo
▴
60
Recent Votes
Recent Locations •
All
United States, just now
United States, 2 minutes ago
United States, 2 minutes ago
China/Beijing/IGDB, 4 minutes ago
UK, 4 minutes ago
Belgium, 6 minutes ago
United States, 6 minutes ago
Recent Awards •
All
Popular Question to
AdviceSeeker
•
0
Great Question to
Ann
★
2.4k
Scholar to
marco.barr
▴
80
Popular Question to
Kash
▴
110
Popular Question to
pfee418
▴
10
Recent Replies
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie
by
atowns21
•
0
So I'd take the json file located [here][1] and essentially create the whitelist to be all possible combinations of the position 1-10 barco…
Comment: TCGA2STAT Error: Firehose connection
by
Ngrin
•
0
Hey Gnana, could you find a way to solve the issue? I have the same error
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie
by
GenoMax
141k
You simply need to make a list of barcodes one on each line: https://kb.10xgenomics.com/hc/en-us/articles/115004506263-What-is-a-barcode-wh…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory
by
GenoMax
141k
> What specifications and operating system would be ideal for my case?
For choice of OS: Linux to access the large pool of open source sof…
Comment: How to convert plink files to Hapmap Format
by
bk11
★
2.3k
Ok. First update your phenotypes because in the 6th column all the values are -9 meaning missing, and then run `--assoc`. You can do the fo…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory
by
i.sudbery
19k
You'll probably get away with using one of the other analysis pipelines, like Alevin-fry with much less than 128GB of RAM. Workstations can…
Comment: Difference between samtools "-f 9" and "-f 11"
by
Dylan
•
0
> (which is weird, if it's in proper pair, read and its mate should be both mapped)
So that was my thought as well, I think the code you l…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory
by
Ram
43k
> several single cell samples
At the same time? You need a server, not a PC. Google around (and search the site as well with keyword "conf…
Answer: Difference between samtools "-f 9" and "-f 11"
by
Pierre Lindenbaum
161k
9: read must be paired AND mate must be unmapped
11: read must be paired AND mapped in proper pair AND mate must be unmapped (which is w…
Comment: How to convert plink files to Hapmap Format
by
Sofia
•
0
the data is binary and associated with a disease but we're studying only the cases and there are other phenotypes of severity
Comment: Cell barcode whitelists for DNBelab C Series High-throughput Single-cell RNA Ser
by
atowns21
•
0
could you share an example command of using STARSolo for the alignment? Did you use the json file directly? Or do you have to re-format the…
Comment: How to trim transcripts using information from NCBI contamination screen report
by
GenoMax
141k
> I didn't do a good job with Trimmomatic for some reason so I have to do some trimming of my transcripts.
If you had extraneous sequence…
Comment: How to convert plink files to Hapmap Format
by
bk11
★
2.3k
Please answer my above question. What type of data is it, binary (cases and controls) or quantitative? You need to update Phenotype info in…
Comment: How to convert plink files to Hapmap Format
by
Sofia
•
0
This is how my .fam file looks like ![enter image description here][1]
[1]: /media/images/caccd97c-3606-48d2-aa32-423a9882
And I run …
Comment: How to convert plink files to Hapmap Format
by
bk11
★
2.3k
What type of phenotype is in your data? It looks like it does not have affection status (default values for affection status will be: 1 = u…
Traffic: 2575 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6