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Comment: Cellranger count error: Input FASTQ file ended prematurely
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That is odd. Thanks for following-up and providing an explanation.
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Dear all,
The reason for the error was due to the index (I1) fastq files, for example `SI-GA-A1_1_S1_L001_I1_001.fastq.gz` having a lo…
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Your tutorial required `sudo` and thus is not doable for a majority of people. Any alternative to `sudo snap`?
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Do not delete posts that have received feedback,
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They aren't merging any datasets. Just for reference the paper is this: https://www.nature.com/articles/s41380-022-01674-9#MOESM1. Citing: …
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BioinfGuru
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https://help.galaxyproject.org/
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The tool RSEM, which performs transcript quantification for RNA-Seq data, provides FPKM.
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Hi! I'm still interested in the step that you use for the SNP calling. Did you use `trimmomatic` or another tool for trimming before mappin…
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The information do not suffice. Please show plots and identified marker genes. Also, make sure it is not a trash cluster with low number of…
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Thank you, I added 'accurate' now ;)
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Guys, just use `samtools sort` which won't get you into trouble with any of that.
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it worked. Thank you. Now my terminal is crashing, seems 16gb of RAM and 4 cores isn't enough. Can you suggest something?
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