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Comment: PCA plot
by
jkim
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170
cross posted in bioconductor.
[https://support.bioconductor.org/p/9157968/][1]
[1]: https://support.bioconductor.org/p/9157968/
Comment: ScRNA data question
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bk11
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Which normalization method did you use for your data? I am guessing you had used SCTransform normalization for your data. Can you plot usin…
Comment: How to make a TSS enrichment plot in ATAC-seq analysis?
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sp
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Hi Dan,
I was wondering if you found out how to make the same graph with NFR and NBR regions with different curves. I was able to recreate…
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QX
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I think the coverage could also computed from bam file itself, but let say I do not include the coverage, do you have any idea why it needs…
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I am moving my answer to a comment. At this point you should email NCBI help desk and ask them this question. If you get an answer then ple…
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the javascript in your html is deprecated or your firefox is just tool old.
Comment: Why gatk VariantAnnotator required bam and coverage files
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> I would like to ask why they may require the bam file for this function?
hum.. if you want to add the coverage, where do you think gatk …
Comment: Figures are disappeared from html report of SnpEff
by
analyst
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By following above approach I got this
![enter image description here][1]
[1]: /media/images/b47490eb-d4c4-4f39-a7b2-f5b7b6b8
Comment: Highest variable features in single cell data
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Kazo
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I apologize for the confusion. What I meant to say is that, for example, the Trbv17 gene appears among the variable genes. However, when I …
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I manage to find a workwround, but I don't understand what I did wrong here.
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Hi,
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by
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so which one should i prefer? i don't need the entire results i need the condition-Germline table only. (for eg:-from, https://www.ncbi.nlm…
Comment: To get p-values for the TPM
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OK, not sure why your intention is to use RSEM p-values for, but at least tell us the commands you ran then otherwise how are we supposed t…
Comment: Fetch table from clinvar database according to a list of rsid
by
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> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: different FeatureCounts output for the same data
by
sehriban.buyukkilic
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Sure, I'll inquire about the version of Rsubread. I'll keep you posted if it works :) Thanks
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