0
votes
0
replies
7
views
0
votes
1
reply
48
views
11
votes
12
replies
455
views
0
votes
0
replies
35
views
0
votes
0
replies
43
views
updated 3 hours ago by
GenoMax
141k
•
written 4 hours ago by
N.Y.Wiyana-Hewage
•
0
795
votes
167
replies
141k
views
109 follow
updated 12 weeks ago by
Biostar
2.6k
•
written 7.4 years ago by
Istvan Albert
100k
0
votes
2
replies
147
views
0
votes
2
replies
149
views
0
votes
1
reply
91
views
2
votes
2
replies
260
views
updated 7 hours ago by
shelkmike
★
1.2k
•
written 15 hours ago by
kirillkirilenko
▴
30
0
votes
0
replies
58
views
updated 8 hours ago by
Ram
43k
•
written 8 hours ago by
samuelkalandarov2002
•
0
1
vote
1
reply
212
views
0
votes
1
reply
123
views
updated 8 hours ago by
Ram
43k
•
written 8 hours ago by
_quantum_girl_
▴
10
0
votes
0
replies
63
views
1
vote
4
replies
561
views
0
votes
0
replies
63
views
9 hours ago by
enferdeflame
•
0
0
votes
0
replies
62
views
0
votes
0
replies
69
views
updated 9 hours ago by
Ram
43k
•
written 11 hours ago by
carlopecoraro2
★
2.5k
1
vote
9
replies
583
views
updated 11 hours ago by
Elisabeth Gasteiger
★
2.4k
•
written 15 hours ago by
Jacky
•
0
0
votes
1
reply
155
views
0
votes
1
reply
165
views
0
votes
0
replies
74
views
updated 9 hours ago by
Ram
43k
•
written 12 hours ago by
carlopecoraro2
★
2.5k
4
votes
2
replies
224
views
0
votes
0
replies
71
views
Tutorial:
DNA Methylation: Sequencing Techniques
0
votes
1
reply
361
views
1
vote
2
replies
228
views
1
vote
4
replies
337
views
0
votes
3
replies
224
views
0
votes
0
replies
78
views
updated 9 hours ago by
Ram
43k
•
written 16 hours ago by
bioinfo223
▴
10
0
votes
0
replies
87
views
16 hours ago by
P.
•
0
0
votes
0
replies
90
views
0
votes
0
replies
121
views
22 hours ago by
renan.igor
•
0
1
vote
1
reply
186
views
updated 19 hours ago by
Ram
43k
•
written 1 day ago by
anasjamshed
▴
120
3
votes
1
reply
554
views
updated 1 day ago by
etiennedanis
▴
20
•
written 19 months ago by
DareDevil
★
4.3k
0
votes
0
replies
106
views
0
votes
1
reply
198
views
5
votes
4
replies
479
views
4 hours ago by
BioinfGuru
★
1.7k
1
vote
1
reply
226
views
0
votes
3
replies
344
views
1
vote
1
reply
181
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
jammydodger123456
▴
40
0
votes
1
reply
303
views
0
votes
2
replies
284
views
20 hours ago by
22211020193
•
0
0
votes
0
replies
116
views
1
vote
2
replies
220
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
aniigodwinn
•
0
2
votes
3
replies
323
views
11 hours ago by
valentinatsar
•
0
1
vote
3
replies
230
views
2
votes
10
replies
559
views
2
votes
2
replies
327
views
0
votes
0
replies
223
views
4
votes
2
replies
1.7k
views
Recent Locations •
All
Brazil, 1 minute ago
Australia, 4 minutes ago
United States, 4 minutes ago
Mexico, 7 minutes ago
Türkiye, 9 minutes ago
United States, 11 minutes ago
Russia, 22 minutes ago
Recent Awards •
All
Commentator to
GenoMax
141k
Centurion to
jkbonfield
★
1.2k
Popular Question to
yueli7
▴
250
Popular Question to
Randy H
▴
110
Popular Question to
ManuelDB
▴
80
Recent Replies
Comment: Removing duplicates
by
joe
▴
500
I'd try those OP @samuel recommends
My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis
by
swbarnes2
14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
Sure. Or, one could do:
bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
This may be the best option.
Get the PDB ID's
$ ./get.sh "Mus musculus" AHR
4M4X
5NJ8
5V0L
8H77
Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
It gives you the first 25 results though. I'll see if I can change that.
EDIT: I've updated that number to 250. I'm hoping you won't need …
Answer: Downloaded pdb's on rcsb.org
by
Ram
43k
I'm going to build off of OP's query and give them a simple script:
```bash
organism=$(echo $1 | sed 's/ /%20/g')
gene=$2
curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool
by
GenoMax
141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads?
Genome (can be download…
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
That's how they seem to have written their query - automating that is a bit of a pain though as it takes a crazy JSON as input.
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
You can use the "Advanced query" builder (https://www.rcsb.org/search/advanced ) to create a query like:
https://www.rcsb.org/search?requ…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
PDB has a search API: https://search.rcsb.org/#search-example-1
Here's the JSON from your search query:
```
{
"query": {
"type": "grou…
Comment: Downloaded pdb's on rcsb.org
by
iamsmor
•
0
Thank you very much. Actually I looked at there, but actually I want to find something like according to search url like this [QUERY: Gene …
Traffic: 1992 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6