0
votes
0
replies
2
views
0
votes
0
replies
18
views
57 minutes ago by
mja
•
0
0
votes
0
replies
23
views
1 hour ago by
Nitin
•
0
1
vote
3
replies
68
views
0
votes
0
replies
21
views
0
votes
0
replies
22
views
1 hour ago by
Rodolfo Adrián
•
0
2
votes
6
replies
883
views
0
votes
1
reply
48
views
0
votes
0
replies
49
views
795
votes
167
replies
141k
views
109 follow
updated 12 weeks ago by
Biostar
2.6k
•
written 7.4 years ago by
Istvan Albert
100k
0
votes
5
replies
484
views
updated 3 hours ago by
BioinfGuru
★
1.7k
•
written 1 day ago by
rrehimi
•
0
0
votes
0
replies
38
views
3 hours ago by
DanielEB_fisk
▴
20
0
votes
1
reply
119
views
4
votes
9
replies
2.5k
views
Tool:
CANEapp, a user-friendly application for automated next generation transcriptomic data analysis
written 8.2 years ago by
dvelmeshev
•
0
2
votes
7
replies
5.1k
views
6 follow
updated 4 hours ago by
ATpoint
81k
•
written 7.1 years ago by
boymin2020
▴
80
4
votes
6
replies
207
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
20 minutes ago by
BioinfGuru
★
1.7k
1
vote
1
reply
290
views
6 hours ago by
Dinmukhamed
•
0
0
votes
0
replies
64
views
updated 3 hours ago by
Ram
43k
•
written 6 hours ago by
Dinmukhamed
•
0
0
votes
0
replies
67
views
1
vote
2
replies
315
views
updated 10 hours ago by
Pierre Lindenbaum
161k
•
written 21 hours ago by
rahu
•
0
0
votes
0
replies
80
views
updated 3 hours ago by
Ram
43k
•
written 11 hours ago by
atharvakarkare14
▴
10
7
votes
3
replies
2.7k
views
updated 11 hours ago by
colindaven
6.3k
•
written 15 months ago by
Dr.Animo
▴
130
3
votes
2
replies
232
views
0
votes
2
replies
388
views
0
votes
2
replies
269
views
11
votes
12
replies
759
views
0
votes
0
replies
100
views
updated 21 hours ago by
GenoMax
141k
•
written 23 hours ago by
N.Y.Wiyana-Hewage
•
0
0
votes
2
replies
252
views
0
votes
2
replies
245
views
15 hours ago by
Ashok
•
0
0
votes
2
replies
268
views
12 hours ago by
Ashok
•
0
5
votes
2
replies
358
views
updated 1 day ago by
shelkmike
★
1.2k
•
written 1 day ago by
kirillkirilenko
▴
40
0
votes
0
replies
108
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
samuelkalandarov2002
•
0
1
vote
1
reply
268
views
0
votes
2
replies
249
views
3 hours ago by
_quantum_girl_
▴
10
0
votes
0
replies
115
views
1
vote
4
replies
604
views
0
votes
0
replies
107
views
1 day ago by
enferdeflame
•
0
0
votes
0
replies
117
views
0
votes
0
replies
123
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
carlopecoraro2
★
2.5k
1
vote
9
replies
660
views
updated 1 day ago by
Elisabeth Gasteiger
★
2.4k
•
written 1 day ago by
Jacky
•
0
0
votes
1
reply
202
views
0
votes
1
reply
219
views
0
votes
0
replies
125
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
carlopecoraro2
★
2.5k
4
votes
2
replies
279
views
1
vote
0
replies
124
views
Tutorial:
DNA Methylation: Sequencing Techniques
0
votes
1
reply
388
views
3
votes
3
replies
406
views
14 hours ago by
SeoGyun
•
0
3
votes
4
replies
405
views
0
votes
0
replies
127
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
bioinfo223
▴
10
0
votes
0
replies
138
views
1 day ago by
P.
•
0
Recent Votes
Recent Locations •
All
Stony Brook University, NY, just now
Concord NC USA, 4 minutes ago
United States, 7 minutes ago
Tehran, 7 minutes ago
United States, 7 minutes ago
Oviedo, 8 minutes ago
Cambridge, MA, 9 minutes ago
Recent Awards •
All
Popular Question to
Rodolfo Adrián
•
0
Scholar to
damian.szk
▴
70
Popular Question to
alphaflylizard
•
0
Popular Question to
Shicheng Guo
★
9.4k
Popular Question to
DanielEB_fisk
▴
20
Recent Replies
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
BioinfGuru
★
1.7k
Certainly true. Switching versions is way simpler that way, at the cost of the familiarity of the Rstudio IDE - especially if the code is w…
Comment: Duplicate marking, read names, and the SRA
by
GenoMax
141k
> fastq-dump is deprecated
Curios if there a reference for this? `fasterq-dump` seems to allow for parallel streams but `fastq-dump` is st…
Comment: Duplicate marking, read names, and the SRA
by
Luka
•
0
>In many cases those remain recoverable using the -F option when you dump the data (cloud download not required)
The -F option (or any equ…
Answer: Duplicate marking, read names, and the SRA
by
GenoMax
141k
To be specific, not every dataset in SRA loses the original identifiers. In many cases those remain recoverable using the `-F` option when …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
Ram
43k
To use different versions of R and bioconductor, you don't really need RStudio. One can simply create new conda environments with the requi…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
BioinfGuru
★
1.7k
Done. Thank you.
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
by
GenoMax
141k
Perhaps add the word linux/ubuntu to the title? You have noted that the instructions are for Ubuntu in text.
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
by
BioinfGuru
★
1.7k
Thanks @Ram I'll add that to the intro. I'm the admin on my machine so I haven't found it necessary to install any other way. I'll try a fr…
Comment: Downloading the raw microarray data from GEO
by
GenoMax
141k
No GPR files with this data unless you ask the submitters for them directly. You can find the matrix of data here: https://ftp.ncbi.nlm.nih…
Comment: Cellranger count error: Input FASTQ file ended prematurely
by
GenoMax
141k
That is odd. Thanks for following-up and providing an explanation.
Answer: Cellranger count error: Input FASTQ file ended prematurely
by
bp22
▴
70
Dear all,
The reason for the error was due to the index (I1) fastq files, for example `SI-GA-A1_1_S1_L001_I1_001.fastq.gz` having a lo…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
by
Ram
43k
Your tutorial required `sudo` and thus is not doable for a majority of people. Any alternative to `sudo snap`?
Comment: Should I apply doublet detection for each pool seperately?
by
Ram
43k
Do not delete posts that have received feedback,
Comment: QC exclusion of A/T or G/C alleles to avoid strand issues
by
_quantum_girl_
▴
10
They aren't merging any datasets. Just for reference the paper is this: https://www.nature.com/articles/s41380-022-01674-9#MOESM1. Citing: …
Comment: RNA seq differential expression analysis
by
BioinfGuru
★
1.7k
https://help.galaxyproject.org/
Traffic: 2523 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6