Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
116,456 results • Page
1 of 2330
Sort: Rank
Rank
Views
Votes
Replies
0
votes
1
reply
310
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
tree
phylogenetic
summarized
microbiome
updated 21 minutes ago by
Akshay
• 0 • written 19 months ago by
Muhammad
• 0
0
votes
0
replies
12
views
DEseq2
RNA
DESeq2
seq
44 minutes ago by
rrehimi
• 0
0
votes
1
reply
44
views
Korean human genome reference file
GWAS
reference
imputation
updated 55 minutes ago by
colindaven
6.3k • written 1 hour ago by
SeoGyun
• 0
1
vote
2
replies
59
views
SLURM submission problem: Indexing the Reference Genome is not done in STAR
align
RNA-Seq
linux
STAR
updated just now by
colindaven
6.3k • written 1 hour ago by
n_navy
• 0
0
votes
2
replies
61
views
RNA seq differential expression analysis
Regarding
seq
data
normalization
RNA
59 minutes ago by
rrehimi
• 0
0
votes
2
replies
65
views
How can I retrieve wheat lysine non-acetylated sequences from the UniProt database?
UniProt
updated 1 hour ago by
me
▴ 750 • written 1 hour ago by
Jacky
• 0
795
votes
167
replies
141k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 12 weeks ago by
Biostar
2.6k • written 7.4 years ago by
Istvan Albert
100k
0
votes
0
replies
29
views
How to compare the quality of assemblies
nextdenovo
assembly
hifiasm
pacbio
updated 59 minutes ago by
colindaven
6.3k • written 1 hour ago by
kirillkirilenko
▴ 20
0
votes
0
replies
25
views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau
score
tspex
2 hours ago by
bioinfo223
▴ 10
0
votes
0
replies
39
views
How to root an unrooted tree with a known root tree?
phylogenetics
rooting
R
2 hours ago by
P.
• 0
0
votes
0
replies
50
views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpEff
4 hours ago by
ekirsch
• 0
0
votes
0
replies
77
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
9 hours ago by
renan.igor
• 0
0
votes
1
reply
144
views
Pediococcus acidilactici sequence analysis
BLAST
Gene-Ontology
updated 5 hours ago by
Ram
43k • written 11 hours ago by
anasjamshed
▴ 120
2
votes
1
reply
519
views
What is the normalization status of metabric data?
metabric
normalization
microarray
cbioportal
updated 10 hours ago by
etiennedanis
▴ 10 • written 19 months ago by
DareDevil
★ 4.3k
0
votes
0
replies
71
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
11 hours ago by
synat.keam
▴ 100
0
votes
1
reply
157
views
assembly using CCS, CLR, CCS_CLR sequences together?
assembly
updated 13 hours ago by
GenoMax
141k • written 13 hours ago by
ycts
• 0
1
vote
3
replies
350
views
DEG analysis of RNA-seq data across multiple tissues and two conditions
RNA-seq
EdgeR
DEGs
DESeq2
updated 14 hours ago by
swbarnes2
14k • written 16 hours ago by
BioinfGuru
★ 1.7k
1
vote
1
reply
189
views
Inconsistency in SNP detection pipelines for multi-sample analysis
vcf
bam
bcf
snps
updated 15 hours ago by
LChart
3.9k • written 17 hours ago by
George
▴ 10
0
votes
0
replies
91
views
Problem with Mirdeep2 and Randfold output
mirdeep2
Randfold
updated 15 hours ago by
Ram
43k • written 15 hours ago by
otieno43
▴ 20
0
votes
2
replies
192
views
Per base sequence content failed miserably
fastqc
sequence
trimmomatic
NGS
assembly
1 hour ago by
Kai Xin
• 0
1
vote
1
reply
153
views
Retrieve a % coverage for each transcript
RNA-seq
updated 17 hours ago by
Ram
43k • written 17 hours ago by
jammydodger123456
▴ 40
0
votes
1
reply
272
views
Pruning Phylogenetic Trees and Bootstrap Values
phylogenetics
bootstrap
updated 17 hours ago by
Klaus S
▴ 150 • written 6 days ago by
Zeng Hao
▴ 40
0
votes
2
replies
237
views
How can I solve this error?
metal
6 hours ago by
22211020193
• 0
0
votes
0
replies
90
views
Struggling to lift genome builds
PLINK
liftover
GWAS
updated 17 hours ago by
GenoMax
141k • written 18 hours ago by
srimmer
• 0
1
vote
2
replies
185
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 16 hours ago by
Ram
43k • written 18 hours ago by
aniigodwinn
• 0
0
votes
2
replies
195
views
Sheep reference genome remapping coordinates
reference
remap
sheep
coordinates
genome
updated 18 hours ago by
colindaven
6.3k • written 23 hours ago by
valentinatsar
• 0
1
vote
3
replies
197
views
Editing Human Reference Genome by adding a CDS
gff
agat
transcriptome
updated 18 hours ago by
Michael
54k • written 19 hours ago by
LDT
▴ 330
0
votes
8
replies
369
views
Questions about a bug when transferring cram file to bam file
sequence
samtools
bcftools
updated 17 hours ago by
Pierre Lindenbaum
161k • written 20 hours ago by
me
• 0
0
votes
1
reply
207
views
differential gene expression analysis when not all samples have an untreated counterpart
differential-expression
edgeR
updated 20 hours ago by
Gordon Smyth
★ 7.0k • written 8 days ago by
nhaus
▴ 300
0
votes
0
replies
153
views
Looking for an explanation as to what the Peak Score is from HOMER, not finding any answers on Biostars yet
Homer
ATAC-seq
21 hours ago by
Ronin
• 0
4
votes
2
replies
1.7k
views
How to convert SAM/BAM file to GTF/GFF file?
GTF
SAM
BAM
GFF
minimap2
updated 22 hours ago by
Dr.Animo
▴ 130 • written 11 months ago by
BioinfoBee
• 0
2
votes
6
replies
474
views
Removing duplicates
duplicates
ONT
minimap2
2 hours ago by
quentinperriere
• 0
0
votes
1
reply
137
views
Annotating a dataset with gnomAD v4 using Hail
Python
Sequencing
Hail
Exome
Annotation
updated 22 hours ago by
DKA
▴ 40 • written 23 hours ago by
james.melhorn
• 0
0
votes
3
replies
202
views
biomaRt error for different R version
biomaRt
R
updated 20 hours ago by
Mike Smith
★ 2.0k • written 1 day ago by
manaswwm
▴ 490
0
votes
1
reply
126
views
Freyja plot error
Freyja
updated 19 hours ago by
Ram
43k • written 1 day ago by
Adyasha
• 0
1
vote
2
replies
142
views
Interpretation of combined P values - RNA microarray meta analysis
metaanalysis
R
microarray
DExMA
combinedP
1 day ago by
hagl
▴ 10
0
votes
0
replies
90
views
BIOM format can contain tabular data ?
BIOM
phyloseq
biomformat
R
1 day ago by
chemokine-1
▴ 10
0
votes
4
replies
333
views
How to reduce the variation of CIBERSORTx results?
CIBERSORTx
deconcolution
3 hours ago by
feather-W
• 0
0
votes
1
reply
153
views
Job:
Consultant to update a Snakemake workflow with the new Kubernetes executor plugin for Snakemake 8
Kubernetes
DevOps
executor
AWS
Snakemake
updated 1 day ago by
Michael
54k • written 1 day ago by
jonrkarr
▴ 100
0
votes
2
replies
159
views
Bedmethyl file format
bedmethyl
methylation
updated 22 hours ago by
GenoMax
141k • written 1 day ago by
njornet
▴ 20
0
votes
0
replies
113
views
sequence table for DADA2 chimera filtering
OTU
sequencetable
DADA2
1 day ago by
Ali
• 0
2
votes
4
replies
247
views
SnpEff annotates coding duplication as intronic?
snpeff
1 day ago by
kirill.zaslavsky
• 0
0
votes
2
replies
184
views
Calculating percentage of cells proliferating in single cell rna seq data
statistics
scRNA-seq
proliferation
23 hours ago by
mropri
▴ 150
0
votes
1
reply
207
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
updated 17 hours ago by
bk11
★ 2.3k • written 1 day ago by
航太郎
• 0
5
votes
4
replies
2.8k
views
genefu for PAM50 prediction
RNA-Seq
breast cancer
subtyping
updated 1 day ago by
hamarillo
▴ 70 • written 5.6 years ago by
silviajserrano
▴ 50
3
votes
10
replies
557
views
Piping samtools to R
R
NGS
bash
samtools
1 day ago by
joe
▴ 500
2
votes
2
replies
194
views
How to filter columns in a raw sparse matrix in R
matrix
R
updated 1 day ago by
bk11
★ 2.3k • written 1 day ago by
bgbs
• 0
3
votes
7
replies
359
views
Integration of transcriptomics and proteomics: difficult matching names
rna-seq
tmt
nomenclature
proteomics
1 day ago by
ntsopoul
▴ 60
0
votes
0
replies
113
views
Input into WGCNA and Error on constructNetworks on RNA-Seq data - unique rownames
rownames
RNA-Seq
WGCNA
unique
1 day ago by
shasabhi1
• 0
0
votes
0
replies
106
views
How to summarize dbCAN3 results
dbCAN
CAZy
CAZyme
dbCAN3
dbCAN2
1 day ago by
Nishat
• 0
116,456 results • Page
1 of 2330
Recent Votes
Answer: long read + salmon? (transcript abundance)
What Is A "Lane" In Next Generation Sequencing Context?
Can I liftover hs37d5 to hg38 using hg19ToHg38 chain file?
Comment: Removing duplicates
Comment: Removing duplicates
High fold change values
C: Bcftools Mpileup Removes Marked Duplicates?
Recent Locations •
All
KAUST,
2 minutes ago
United States,
3 minutes ago
Brazil,
3 minutes ago
France,
3 minutes ago
China,
3 minutes ago
Norway,
4 minutes ago
Saudi Arabia,
5 minutes ago
Recent Awards •
All
Student
to
manaswiniparija3
▴ 40
Popular Question
to
tomas4482
▴ 390
Popular Question
to
vinayjrao
▴ 250
Scholar
to
Scooter
▴ 280
Popular Question
to
Yingying
• 0
Popular Question
to
anasjamshed
▴ 120
Popular Question
to
synat.keam
▴ 100
Recent Replies
Comment: Indexing the Reference Genome is not done in STAR
by
n_navy
• 0
I add these parameters; #SBATCH -N 4 #SBATCH --tasks=1 #SBATCH -c 4 #SBATCH --time=24:00:00 But it keeps giving error
Comment: RNA seq differential expression analysis
by
rrehimi
• 0
Thanks! Could you please explain the DEseq2 method using Galaxy step by step? Input files?
Answer: Korean reference file
by
colindaven
6.3k
Is is this one - KOREF ? There might be multiple versions. https://www.ncbi.nlm.nih.gov/bioproject/PRJNA294231/ If it is, then take that…
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
by
me
▴ 750
The question is not quite clear? are you asking for wheat proteins in UniProtKB which contain a lysine amino-acid, where those lysine are *…
Comment: RNA seq differential expression analysis
by
seta
★ 1.9k
You should provide row count (without normalization) for doing DEG analysis by relevant tools such as, edgeR or DEseq.
Comment: GSEA analysis in R
by
Sudip
• 0
Thank you. I have another question. Is there a way to get the gene list under "setSize" from the output that you gave as an example.
Comment: Per base sequence content failed miserably
by
Kai Xin
• 0
Hi, i have added the fastqc plots (untrimmed and trimmed). The sample was from anaerobes enriched from wastewater treatment plant, and this…
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
by
Pierre Lindenbaum
161k
> lysine non-acetylated sequences what does it look like in uniprot ? give us an example with a uniprot identifier.
Answer: Indexing the Reference Genome is not done in STAR
by
Pierre Lindenbaum
161k
> CPU time limit exceeded your command is taking too long and can't be completed. check your cluster documentation to allocate more …
Comment: Removing duplicates
by
quentinperriere
• 0
thank you for responding. I was looking for suitable variant calling tool. I'm working on fungus and I don't have fast5 files. Could you re…
Comment: How to reduce the variation of CIBERSORTx results?
by
feather-W
• 0
Hi LChart, Thanks for your reply. I see S-mode in the CIBERSORTx official website tutorial(https://cibersortx.stanford.edu/), and the imag…
Comment: How to reduce the variation of CIBERSORTx results?
by
LChart
3.9k
First time I've heard of S-mode. I imagine you've seen this benchmark where it doesn't come out too well: https://academic.oup.com/bib/arti…
Comment: ISCN annotation for SV/CN VCF files
by
adedare
• 0
https://res.saletool.cn/vcf/18084521725806
Comment: ISCN annotation for SV/CN VCF files
by
adedare
• 0
https://res.saletool.cn/vcf/18084435127462
Comment: How can I solve this error?
by
22211020193
• 0
I want to conduct GWAS meta-analysis using metal software.
Traffic: 2988 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6