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116,495 results • Page
1 of 2330
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0
votes
0
replies
22
views
CpGtools no output
methylation
cpgtools
1 hour ago by
Anna
• 0
0
votes
0
replies
28
views
GTF file from Stringtie to R Studio for either Ballgown or DESeq2
Stringtie
Cufflinks
Ballgown
DESeq2
1 hour ago by
Nina
• 0
0
votes
1
reply
80
views
MEGA Analysis Issue on High-Performance Computer
phylogenetic
analysis
bioinformatics
MEGA
updated 2 hours ago by
Mensur Dlakic
★ 27k • written 3 hours ago by
Giorgio
• 0
795
votes
167
replies
141k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 12 weeks ago by
Biostar
2.6k • written 7.4 years ago by
Istvan Albert
100k
0
votes
0
replies
43
views
Removing Illumina microarray probes with no expression HumanHT-12v4
Low
expression
microarray
HumanHT-12v4
Illumina
3 hours ago by
Bioinformatician
• 0
0
votes
1
reply
111
views
Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits
shotgun
metagenomics
blastp
taxonomy
updated 3 hours ago by
GenoMax
141k • written 5 hours ago by
rebecca.calvo
• 0
0
votes
0
replies
65
views
Using samtools with GCS (google cloud storage) on docker a docker container seems to give "Protocol Not Supported" error
samtools
gcs
5 hours ago by
abhishekghadge
• 0
0
votes
2
replies
153
views
how to find genes that are significantly expressed in brain cortex samples
rna-seq
gene-expression
3 hours ago by
rheab1230
▴ 140
1
vote
4
replies
303
views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated 5 hours ago by
Matthias Zepper
4.5k • written 7 hours ago by
Ann
★ 2.4k
0
votes
0
replies
61
views
agilent microarray gpl data does not have gene symbol column
microarray
agilent
gpl
updated 6 hours ago by
Ram
43k • written 8 hours ago by
mja
• 0
0
votes
0
replies
72
views
scRNA Cluster frequency
CV
PCA
scRNA
Cluster-Frequency
8 hours ago by
Nitin
• 0
1
vote
5
replies
359
views
Duplicate marking, read names, and the SRA
SRA
MarkDuplicates
updated 6 hours ago by
GenoMax
141k • written 8 hours ago by
Luka
• 0
0
votes
0
replies
75
views
absolute path for symbolic links in Snakefile
Snakemake
updated 8 hours ago by
Ram
43k • written 9 hours ago by
yifangt86
▴ 60
0
votes
0
replies
68
views
Chemical structure validation
structure
cap
validation
metabolite
9 hours ago by
Rodolfo Adrián
• 0
2
votes
6
replies
985
views
Cellranger count error: Input FASTQ file ended prematurely
scRNA-seq
Cellranger
STARsolo
10X
updated 9 hours ago by
GenoMax
141k • written 8 months ago by
bp22
▴ 70
0
votes
1
reply
136
views
Downloading the raw microarray data from GEO
.gpr
microarray
.CEL
updated 9 hours ago by
GenoMax
141k • written 9 hours ago by
bioyas
▴ 10
0
votes
0
replies
84
views
Copy number variation plot
Copy-number-variation
genomics
updated 10 hours ago by
Ram
43k • written 10 hours ago by
Emmi
• 0
0
votes
5
replies
538
views
RNA seq differential expression analysis
RNA-seq
normalization
updated 11 hours ago by
BioinfGuru
★ 1.7k • written 1 day ago by
rrehimi
• 0
0
votes
0
replies
76
views
SNP calling with ANGSD and ngsLD. How many SNPs?
lcwgs
ngsTools
ANGSD
genomics
11 hours ago by
DanielEB_fisk
▴ 20
0
votes
1
reply
159
views
Could you please assist in identifying this cluster?
single-cell
updated 10 hours ago by
Ram
43k • written 12 hours ago by
Kazo
• 0
4
votes
9
replies
2.5k
views
Tool:
CANEapp, a user-friendly application for automated next generation transcriptomic data analysis
RNA-Seq
written 8.2 years ago by
dvelmeshev
• 0
2
votes
7
replies
5.1k
views
6 follow
Memory usage of picard Samsort
Picard
SortSam
updated 12 hours ago by
ATpoint
81k • written 7.1 years ago by
boymin2020
▴ 80
4
votes
10
replies
638
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
R
Ubuntu
Linux
Bioconductor
Rstudio
3 hours ago by
BioinfGuru
★ 1.7k
1
vote
1
reply
316
views
Plink merge errors.
cygwin64
bed
PLINK
14 hours ago by
Dinmukhamed
• 0
0
votes
0
replies
90
views
Conversion to tree format
PLINK
bed
Figtree
SplitsTree
updated 10 hours ago by
Ram
43k • written 14 hours ago by
Dinmukhamed
• 0
0
votes
0
replies
92
views
miRDeep2: How to get the read counts
mirdeep2
16 hours ago by
Atul K.
• 0
1
vote
2
replies
351
views
Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (without Blat)
mapping
updated 18 hours ago by
Pierre Lindenbaum
161k • written 1 day ago by
rahu
• 0
0
votes
0
replies
102
views
Lncipedia GTF file error
Proteomics
updated 10 hours ago by
Ram
43k • written 18 hours ago by
atharvakarkare14
▴ 10
7
votes
3
replies
2.7k
views
Tutorial:
Prediction of Ribosomal RNA Genes Using RNAmmer Software
Annotation
rRNA
RNAmmer
Genome
updated 19 hours ago by
colindaven
6.3k • written 15 months ago by
Dr.Animo
▴ 130
3
votes
2
replies
270
views
Free/open source 23andme-like analysis
SNPs
genomics
NGS
VCF
12 hours ago by
joe
▴ 510
0
votes
2
replies
413
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
1 day ago by
航太郎
• 0
0
votes
2
replies
294
views
Adding CB tag to bam file
samtools
bam
17 hours ago by
Maria
• 0
11
votes
12
replies
792
views
Downloaded pdb's on rcsb.org
rcsb
pdb
updated 1 day ago by
Ram
43k • written 1 day ago by
iamsmor
• 0
0
votes
0
replies
118
views
create genewise sync file in popoolation
popoolation
updated 1 day ago by
GenoMax
141k • written 1 day ago by
N.Y.Wiyana-Hewage
• 0
0
votes
2
replies
278
views
python file for coding potential calculator
cpc2.py
22 hours ago by
Ashok
• 0
0
votes
2
replies
270
views
error in coding potential calculator CPC2
cpc
CPC2
coding-potential
22 hours ago by
Ashok
• 0
0
votes
2
replies
295
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
20 hours ago by
Ashok
• 0
5
votes
2
replies
378
views
How to compare the quality of assemblies
nextdenovo
assembly
hifiasm
pacbio
updated 1 day ago by
shelkmike
★ 1.2k • written 1 day ago by
kirillkirilenko
▴ 40
0
votes
0
replies
123
views
Variant Generation Using Longshot
long-reads
variant-calling
ONT
minion
longshot
updated 1 day ago by
Ram
43k • written 1 day ago by
samuelkalandarov2002
• 0
1
vote
1
reply
284
views
Problem with Mirdeep2 and Randfold output
mirdeep2
Randfold
1 day ago by
otieno43
▴ 30
0
votes
2
replies
305
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
10 hours ago by
_quantum_girl_
▴ 10
0
votes
0
replies
131
views
traying to make a maf from an already annotated vcf
vcf2maf
VEP
maftools
updated 1 day ago by
Ram
43k • written 1 day ago by
Javier
• 0
1
vote
4
replies
617
views
What happened to Tombo Re-squiggle
Tombo
resquiggle
ONT
updated 1 day ago by
Ram
43k • written 3 months ago by
turcoa1
• 0
0
votes
0
replies
122
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
1 day ago by
enferdeflame
• 0
0
votes
0
replies
136
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
1 day ago by
Chris
▴ 260
0
votes
0
replies
140
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 1 day ago by
Ram
43k • written 1 day ago by
carlopecoraro2
★ 2.5k
1
vote
9
replies
675
views
How can I retrieve wheat lysine non-acetylated sequences from the UniProt database?
UniProt
updated 1 day ago by
Elisabeth Gasteiger
★ 2.4k • written 1 day ago by
Jacky
• 0
0
votes
1
reply
214
views
10x VDJ (TCR/BCR) BAM to fastq
TCR
VDJ
BCR
10x
updated 1 day ago by
GenoMax
141k • written 1 day ago by
predeus
★ 1.9k
0
votes
1
reply
231
views
DEseq2
RNA-seq
DESeq2
updated 1 day ago by
Ram
43k • written 1 day ago by
rrehimi
• 0
0
votes
0
replies
140
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 1 day ago by
Ram
43k • written 1 day ago by
carlopecoraro2
★ 2.5k
116,495 results • Page
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bcftools multiple commands
bcftools pipe generated file from first command with second
C: How to setup a Summarized Experiment
A: How to download genome assemblies from NCBI with a list of GCA identifiers?
what's the genomic location and name of gene responsible for orange and black patches in calico cats
Comment: featureCounts --primary tag counting uniquely mapped reads and excludes multi-ma
Answer: Duplicate marking, read names, and the SRA
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Answer: MEGA Analysis Issue on High-Performance Computer
by
Mensur Dlakic
★ 27k
> I have ensured that I am using the latest version of MEGA and that other applications are not consuming excessive resources during the an…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
BioinfGuru
★ 1.7k
Some of us are still learning and fall foul to knowledge limitation fairly regularly. Luckily we have people to put us in our place.
Answer: Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits
by
GenoMax
141k
> I know that I should be able to collect protein sequences from the blastp results into a file, but I do not know how to do this. You c…
Comment: how to find genes that are significantly expressed in brain cortex samples
by
rheab1230
▴ 140
I got the normalized gene count from gtex portal. they use inverse quantile normalization
Comment: what's the genomic location and name of gene responsible for orange and black pa
by
Matthias Zepper
4.5k
It is not entirely off, but evidently also not correct. Melanin biosynthesis is a multistep process, that indeed prominently involves the…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
Ram
43k
> so a single Rscript could utilise multiple environments and versions How is that sane, let alone "better"? Also, why use `snap` for curl…
Comment: how to find genes that are significantly expressed in brain cortex samples
by
Ram
43k
Normalized how?
Comment: Duplicate marking, read names, and the SRA
by
GenoMax
141k
With public data one has to work with what is there. If the information about position is absent then only thing that could be done is to l…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
BioinfGuru
★ 1.7k
Or better yet. To have an R package that allows access to conda environments via "conda list env" so that environments can be switched with…
Comment: what's the genomic location and name of gene responsible for orange and black pa
by
GenoMax
141k
If GPT is right then it says that: > The specific gene responsible for the orange and non-orange (black or > gray) fur colors in cats is t…
Comment: what's the genomic location and name of gene responsible for orange and black pa
by
Jean-Karim Heriche
27k
As far as I know the Orange locus hasn't been mapped to a gene. Maybe this paper will help in narrowing the search: https://www.ncbi.nlm.ni…
Comment: Duplicate marking, read names, and the SRA
by
Luka
• 0
>Curios if there a reference for this? [Apparently it's not deprecated yet][1], but will be soon and the SRA intends for it to be at some …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
Ram
43k
I prefer RStudio for new projects as well. The moment I need versions though, RStudio becomes a burden. I wish one could launch RStudio fro…
Comment: what's the genomic location and name of gene responsible for orange and black pa
by
GenoMax
141k
According to ChatGPT: The gene responsible for the orange and black patches of fur in calico cats (and tortoiseshell cats) is the X-linked …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
BioinfGuru
★ 1.7k
Certainly true. Switching versions is way simpler that way, at the cost of the familiarity of the Rstudio IDE - especially if the code is w…
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