Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
116,496 results • Page
1 of 2330
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
8
views
Filtering sam or bam file with maximum matching region
crisper-edited
alignment
match
51 minutes ago by
analyst
▴ 20
0
votes
1
reply
96
views
Removing Illumina microarray probes with no expression HumanHT-12v4
microarray
HumanHT-12v4
Illumina
updated 1 hour ago by
Gordon Smyth
★ 7.0k • written 11 hours ago by
Bioinformatician
• 0
1
vote
0
replies
75
views
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Primers
TRINITY
3 hours ago by
mathavanbioinfo
▴ 90
0
votes
1
reply
144
views
GTF file from Stringtie to R Studio for either Ballgown or DESeq2
Stringtie
Cufflinks
Ballgown
DESeq2
updated 6 hours ago by
Ram
43k • written 9 hours ago by
Nina
• 0
795
votes
167
replies
141k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 12 weeks ago by
Biostar
2.6k • written 7.4 years ago by
Istvan Albert
100k
1
vote
1
reply
145
views
MEGA Analysis Issue on High-Performance Computer
phylogenetic-analysis
MEGA
updated 7 hours ago by
Ram
43k • written 11 hours ago by
Giorgio
• 0
0
votes
1
reply
163
views
Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits
shotgun
metagenomics
blastp
taxonomy
updated 11 hours ago by
GenoMax
141k • written 13 hours ago by
rebecca.calvo
• 0
0
votes
0
replies
108
views
Using samtools with GCS (google cloud storage) on docker a docker container seems to give "Protocol Not Supported" error
samtools
gcs
13 hours ago by
abhishekghadge
• 0
0
votes
3
replies
293
views
how to find genes that are significantly expressed in brain cortex samples
rna-seq
gene-expression
updated 7 hours ago by
Ram
43k • written 13 hours ago by
rheab1230
▴ 140
1
vote
4
replies
391
views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated 13 hours ago by
Matthias Zepper
4.5k • written 15 hours ago by
Ann
★ 2.4k
0
votes
0
replies
95
views
agilent microarray gpl data does not have gene symbol column
microarray
agilent
gpl
updated 14 hours ago by
Ram
43k • written 16 hours ago by
mja
• 0
0
votes
0
replies
99
views
scRNA Cluster frequency
CV
PCA
scRNA
Cluster-Frequency
16 hours ago by
Nitin
• 0
1
vote
5
replies
410
views
Duplicate marking, read names, and the SRA
SRA
MarkDuplicates
updated 13 hours ago by
GenoMax
141k • written 16 hours ago by
Luka
• 0
0
votes
0
replies
106
views
absolute path for symbolic links in Snakefile
Snakemake
updated 16 hours ago by
Ram
43k • written 16 hours ago by
yifangt86
▴ 60
0
votes
0
replies
96
views
Chemical structure validation
structure
cap
validation
metabolite
17 hours ago by
Rodolfo Adrián
• 0
3
votes
8
replies
1.1k
views
Cellranger count error: Input FASTQ file ended prematurely
scRNA-seq
Cellranger
STARsolo
10X
updated 2 hours ago by
swbarnes2
14k • written 8 months ago by
bp22
▴ 80
0
votes
1
reply
167
views
Downloading the raw microarray data from GEO
.gpr
microarray
.CEL
updated 17 hours ago by
GenoMax
141k • written 17 hours ago by
bioyas
▴ 10
0
votes
0
replies
114
views
Copy number variation plot
Copy-number-variation
genomics
updated 18 hours ago by
Ram
43k • written 18 hours ago by
Emmi
• 0
1
vote
5
replies
574
views
RNA seq differential expression analysis
RNA-seq
normalization
updated 19 hours ago by
BioinfGuru
★ 1.7k • written 2 days ago by
rrehimi
• 0
0
votes
0
replies
99
views
SNP calling with ANGSD and ngsLD. How many SNPs?
lcwgs
ngsTools
ANGSD
genomics
19 hours ago by
DanielEB_fisk
▴ 20
0
votes
1
reply
193
views
Could you please assist in identifying this cluster?
single-cell
updated 18 hours ago by
Ram
43k • written 20 hours ago by
Kazo
• 0
4
votes
9
replies
2.6k
views
Tool:
CANEapp, a user-friendly application for automated next generation transcriptomic data analysis
RNA-Seq
written 8.2 years ago by
dvelmeshev
• 0
2
votes
7
replies
5.2k
views
6 follow
Memory usage of picard Samsort
Picard
SortSam
updated 20 hours ago by
ATpoint
81k • written 7.1 years ago by
boymin2020
▴ 80
5
votes
11
replies
769
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
R
Ubuntu
Linux
Bioconductor
Rstudio
updated 7 hours ago by
Ram
43k • written 21 hours ago by
BioinfGuru
★ 1.7k
1
vote
1
reply
332
views
Plink merge errors.
cygwin64
bed
PLINK
22 hours ago by
Dinmukhamed
• 0
0
votes
0
replies
118
views
Conversion to tree format
PLINK
bed
Figtree
SplitsTree
updated 18 hours ago by
Ram
43k • written 22 hours ago by
Dinmukhamed
• 0
0
votes
0
replies
119
views
miRDeep2: How to get the read counts
mirdeep2
1 day ago by
Atul K.
• 0
1
vote
2
replies
394
views
Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (without Blat)
mapping
updated 1 day ago by
Pierre Lindenbaum
161k • written 1 day ago by
rahu
• 0
0
votes
0
replies
128
views
Lncipedia GTF file error
Proteomics
updated 18 hours ago by
Ram
43k • written 1 day ago by
atharvakarkare14
▴ 10
7
votes
3
replies
2.7k
views
Tutorial:
Prediction of Ribosomal RNA Genes Using RNAmmer Software
Annotation
rRNA
RNAmmer
Genome
updated 1 day ago by
colindaven
6.4k • written 15 months ago by
Dr.Animo
▴ 130
3
votes
3
replies
339
views
Free/open source 23andme-like analysis
SNPs
genomics
NGS
VCF
updated 2 hours ago by
swbarnes2
14k • written 1 day ago by
joe
▴ 510
0
votes
2
replies
432
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
1 day ago by
航太郎
• 0
0
votes
3
replies
361
views
Adding CB tag to bam file
samtools
bam
updated 3 hours ago by
swbarnes2
14k • written 1 day ago by
Maria
• 0
11
votes
12
replies
812
views
Downloaded pdb's on rcsb.org
rcsb
pdb
updated 1 day ago by
Ram
43k • written 1 day ago by
iamsmor
• 0
0
votes
0
replies
140
views
create genewise sync file in popoolation
popoolation
updated 1 day ago by
GenoMax
141k • written 1 day ago by
N.Y.Wiyana-Hewage
• 0
0
votes
2
replies
299
views
python file for coding potential calculator
cpc2.py
1 day ago by
Ashok
• 0
0
votes
2
replies
291
views
error in coding potential calculator CPC2
cpc
CPC2
coding-potential
1 day ago by
Ashok
• 0
0
votes
2
replies
326
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
1 day ago by
Ashok
• 0
5
votes
2
replies
390
views
How to compare the quality of assemblies
nextdenovo
assembly
hifiasm
pacbio
updated 1 day ago by
shelkmike
★ 1.2k • written 2 days ago by
kirillkirilenko
▴ 40
0
votes
0
replies
145
views
Variant Generation Using Longshot
long-reads
variant-calling
ONT
minion
longshot
updated 1 day ago by
Ram
43k • written 1 day ago by
samuelkalandarov2002
• 0
1
vote
1
reply
300
views
Problem with Mirdeep2 and Randfold output
mirdeep2
Randfold
1 day ago by
otieno43
▴ 30
0
votes
2
replies
345
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
18 hours ago by
_quantum_girl_
▴ 10
0
votes
0
replies
150
views
traying to make a maf from an already annotated vcf
vcf2maf
VEP
maftools
updated 1 day ago by
Ram
43k • written 1 day ago by
Javier
• 0
1
vote
4
replies
628
views
What happened to Tombo Re-squiggle
Tombo
resquiggle
ONT
updated 1 day ago by
Ram
43k • written 3 months ago by
turcoa1
• 0
0
votes
0
replies
146
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
1 day ago by
enferdeflame
• 0
0
votes
0
replies
158
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
1 day ago by
Chris
▴ 260
0
votes
0
replies
160
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 1 day ago by
Ram
43k • written 1 day ago by
carlopecoraro2
★ 2.5k
3
votes
9
replies
696
views
How can I retrieve wheat lysine non-acetylated sequences from the UniProt database?
UniProt
updated 1 day ago by
Elisabeth Gasteiger
★ 2.4k • written 2 days ago by
Jacky
• 0
0
votes
1
reply
235
views
10x VDJ (TCR/BCR) BAM to fastq
TCR
VDJ
BCR
10x
updated 1 day ago by
GenoMax
141k • written 1 day ago by
predeus
★ 1.9k
0
votes
1
reply
247
views
DEseq2
RNA-seq
DESeq2
updated 1 day ago by
Ram
43k • written 2 days ago by
rrehimi
• 0
116,496 results • Page
1 of 2330
Recent Votes
Answer: Ubuntu storage space is decreasing automatically
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
Answer: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Answer: Cellranger count error: Input FASTQ file ended prematurely
Answer: RNA seq differential expression analysis
Answer: MEGA Analysis Issue on High-Performance Computer
Recent Locations •
All
Estonia,
1 minute ago
India,
1 minute ago
Australia,
1 minute ago
Mt. Pleasant, MI,
7 minutes ago
Russia,
7 minutes ago
Bologna,
7 minutes ago
China,
9 minutes ago
Recent Awards •
All
Scholar
to
Ann
★ 2.4k
Popular Question
to
Rodolfo Adrián
• 0
Scholar
to
damian.szk
▴ 70
Popular Question
to
alphaflylizard
• 0
Scholar
to
GenoMax
141k
Popular Question
to
Shicheng Guo
★ 9.4k
Popular Question
to
DanielEB_fisk
▴ 20
Recent Replies
Answer: Removing Illumina microarray probes with no expression HumanHT-12v4
by
Gordon Smyth
★ 7.0k
Type ``` help("read.idat") ``` and read the example at the bottom of the page, which shows you how to set the `other$Detection` component o…
Comment: Free/open source 23andme-like analysis
by
swbarnes2
14k
Accurately assessing a few QC metrics is trivially easy. Assessing the significance of variants in a clinically responsible way is really…
Comment: Cellranger count error: Input FASTQ file ended prematurely
by
swbarnes2
14k
If _1 and _2 really are the same library, you should rename the fastqs, or make symlinks, such that they have the same sample name, but dif…
Comment: Cellranger count error: Input FASTQ file ended prematurely
by
ATpoint
81k
Just delete the index read files. They just take up space and will never be used.
Comment: Adding CB tag to bam file
by
swbarnes2
14k
Yes. Why wouldn't you use, say, AddOrReplaceReadsGroups?
Comment: Ciriquant not configuring hisat2 indexed files
by
Atul K.
• 0
Thank you. Decreased the threads to 2 (changed the threads: 2 in the config file; but it was somehow using 4). It did run for sometime but …
Answer: GTF file from Stringtie to R Studio for either Ballgown or DESeq2
by
Ram
43k
See this section on how to use tximport to import StringTie output for DESeq2 processing: https://bioconductor.org/packages/devel/bioc/vign…
Comment: how to find genes that are significantly expressed in brain cortex samples
by
Ram
43k
Can you explain the normalization or give me a link that describes it, please? Comparison across samples will always be caveated as RNA-seq…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
Ram
43k
Sorry, I see how harsh I come across. It's not good practice to use multiple versions of R in the same project. I can understand legacy pro…
Answer: MEGA Analysis Issue on High-Performance Computer
by
Mensur Dlakic
★ 27k
> I have ensured that I am using the latest version of MEGA and that other applications are not consuming excessive resources during the an…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
BioinfGuru
★ 1.7k
Some of us are still learning and fall foul to knowledge limitation fairly regularly. Luckily we have people to put us in our place.
Answer: Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits
by
GenoMax
141k
> I know that I should be able to collect protein sequences from the blastp results into a file, but I do not know how to do this. You c…
Comment: how to find genes that are significantly expressed in brain cortex samples
by
rheab1230
▴ 140
I got the normalized gene count from gtex portal. they use inverse quantile normalization
Comment: what's the genomic location and name of gene responsible for orange and black pa
by
Matthias Zepper
4.5k
It is not entirely off, but evidently also not correct. Melanin biosynthesis is a multistep process, that indeed prominently involves the…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
Ram
43k
> so a single Rscript could utilise multiple environments and versions How is that sane, let alone "better"? Also, why use `snap` for curl…
Traffic: 1588 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6