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Improvement on automatic annotation of single-cell RNA-seq data from the literature using LLM
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Recent Replies
Comment: Redirection of Duplicate PMIDs
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let me know the scope and scale of the request (e.g. I need to do this for every record in Pubmed) and can help
Comment: Redirection of Duplicate PMIDs
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dominickd
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I was able to come up with a workaround using the requests library:
import requests
pmid = 30134295
url = 'https://pubmed.ncbi…
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Thanks for you answer! Actually I have already filtered my peak according to blacklist by bedtools. You mean it's meaningless to compare on…
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More than likely not since the database query seems to work for the redirected PMID but not the original.
$ esearch -db pubmed -query …
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Blast showed PDB: 8J07_n9(human) as best template with 62.99%.
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Comment: How to slice a gvcf file with tabix?
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Sd
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Then what is the best way to do slicing for 1Mb windows? Doing `--intervals` in the GenomicsDBImport?
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> What is your suggestion to run GenomicsDBImport efficiently?
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I check dataframe it has more than 2 columns
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Farhad
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We write it to csv and then send it via email
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