updated 10 minutes ago by
Pierre Lindenbaum
161k
•
written 2 hours ago by
ashaneev07
▴
20
0
votes
3
replies
61
views
0
votes
1
reply
31
views
updated 52 minutes ago by
Pierre Lindenbaum
161k
•
written 1 hour ago by
analyst
▴
30
0
votes
1
reply
36
views
updated 1 hour ago by
b.contreras.moreira
▴
170
•
written 2 hours ago by
Broccoli
•
0
0
votes
1
reply
35
views
0
votes
1
reply
104
views
2
votes
4
replies
2.3k
views
updated 4 hours ago by
ZhangYuanfeng
•
0
•
written 2.4 years ago by
Frazier Baker
•
0
0
votes
0
replies
43
views
5 hours ago by
Ming Tommy Tang
★
3.9k
0
votes
3
replies
236
views
updated 6 hours ago by
Kevin Blighe
87k
•
written 2 days ago by
qudrat.nii
▴
10
795
votes
167
replies
141k
views
109 follow
updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
0
votes
4
replies
2.6k
views
updated 6 hours ago by
evawillms183
•
0
•
written 8.3 years ago by
andrepleao
•
0
0
votes
0
replies
59
views
2
votes
3
replies
222
views
updated 2 days ago by
Mensur Dlakic
★
27k
•
written 2 days ago by
emmanouil.a
▴
120
0
votes
1
reply
114
views
updated 10 hours ago by
Pierre Lindenbaum
161k
•
written 12 hours ago by
DKA
▴
40
0
votes
2
replies
142
views
updated 10 hours ago by
Mensur Dlakic
★
27k
•
written 13 hours ago by
biochugs
•
0
3
votes
8
replies
396
views
1
vote
8
replies
665
views
updated 38 minutes ago by
Pierre Lindenbaum
161k
•
written 6 days ago by
Maria
•
0
1
vote
10
replies
855
views
13 hours ago by
DKA
▴
40
0
votes
0
replies
67
views
15 hours ago by
hemantcnaik
•
0
0
votes
2
replies
747
views
0
votes
4
replies
169
views
0
votes
0
replies
81
views
updated 13 hours ago by
Ram
43k
•
written 18 hours ago by
glaciya2018
•
0
0
votes
0
replies
70
views
18 hours ago by
David Langenberger
11k
0
votes
0
replies
137
views
0
votes
14
replies
3.4k
views
6 follow
updated 19 hours ago by
drstalinantony28
•
0
•
written 2.2 years ago by
ymj
▴
10
0
votes
1
reply
104
views
updated 17 hours ago by
Sofia
•
0
•
written 21 hours ago by
mawigoj318
•
0
0
votes
0
replies
89
views
22 hours ago by
salias
•
0
4
votes
7
replies
310
views
0
votes
4
replies
160
views
10 minutes ago by
sehriban.buyukkilic
▴
10
0
votes
0
replies
79
views
updated 13 hours ago by
Ram
43k
•
written 23 hours ago by
newuser2024
•
0
1
vote
2
replies
139
views
2 hours ago by
ahmad.sajad4541
•
0
0
votes
0
replies
75
views
updated 13 hours ago by
Ram
43k
•
written 1 day ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
71
views
0
votes
2
replies
182
views
2
votes
2
replies
167
views
updated 1 day ago by
analyst
▴
30
•
written 1 day ago by
lorena9132
•
0
0
votes
0
replies
82
views
7
votes
2
replies
232
views
updated 1 day ago by
geneontologyhelp
▴
390
•
written 2 days ago by
catherine.teyssier
•
0
0
votes
1
reply
174
views
updated 1 day ago by
Istvan Albert
100k
•
written 2 days ago by
Abeer
•
0
0
votes
4
replies
254
views
0
votes
1
reply
121
views
updated 1 day ago by
Mensur Dlakic
★
27k
•
written 1 day ago by
benguyarenbeyaz98
•
0
0
votes
2
replies
205
views
updated 13 hours ago by
Ram
43k
•
written 1 day ago by
v.berriosfarias
▴
140
2
votes
1
reply
180
views
1
vote
1
reply
151
views
updated 1 day ago by
Pierre Lindenbaum
161k
•
written 1 day ago by
Biostar
2.7k
1
vote
1
reply
125
views
updated 1 day ago by
GenoMax
141k
•
written 1 day ago by
heelpPlease
•
0
2
votes
9
replies
798
views
0
votes
10
replies
365
views
0
votes
1
reply
135
views
updated 1 day ago by
bk11
★
2.3k
•
written 1 day ago by
alphaflylizard
•
0
3
votes
3
replies
200
views
0
votes
3
replies
217
views
updated 1 day ago by
Istvan Albert
100k
•
written 1 day ago by
Dylan
•
0
1
vote
4
replies
221
views
Recent Votes
Recent Locations •
All
France, 1 minute ago
France, 2 minutes ago
United Kingdom, 2 minutes ago
UCLA, 3 minutes ago
Bologna, 5 minutes ago
Pakistan, 7 minutes ago
Atlanta, 8 minutes ago
Recent Awards •
All
Popular Question to
anasjamshed
▴
120
Popular Question to
camillab.
▴
160
Popular Question to
Simone
▴
10
Popular Question to
carlopecoraro2
★
2.5k
Popular Question to
daffodil
▴
10
Popular Question to
Russ
▴
500
Recent Replies
Comment: To get p-values for the TPM
by
dsull
★
5.8k
OK, not sure why your intention is to use RSEM p-values for, but at least tell us the commands you ran then otherwise how are we supposed t…
Comment: Fetch table from clinvar database according to a list of rsid
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: different FeatureCounts output for the same data
by
sehriban.buyukkilic
▴
10
Sure, I'll inquire about the version of Rsubread. I'll keep you posted if it works :) Thanks
Comment: different FeatureCounts output for the same data
by
sehriban.buyukkilic
▴
10
Yeah, let me show you my featureCounts result, it looks like this. It's too low.
[1]: /media/images/eb8293fe-e6ae-4b02-92e2-0ba2075b
Comment: Adding CB tag to bam file
by
Pierre Lindenbaum
161k
samtools addreplacerg is for read groups. This is not what OP asked.
Comment: Adding CB tag to bam file
by
Maria
•
0
When I try ``` samtools addreplacerg -r "@CB\tID:$cell" -o $cell.bam $LINE``` the CB tag gets add to the header, but the tag in every line …
Answer: Figures are disappeared from html report of SnpEff
by
Pierre Lindenbaum
161k
the remote website providing the javascript or/and the images is down or you're now behind a proxy. Check the firefox console: https://fire…
Comment: Fetch table from clinvar database according to a list of rsid
by
Pierre Lindenbaum
161k
ah ! and your code doesn't work because clinvar ID is not a rs-ID.
Answer: Fetch table from clinvar database according to a list of rsid
by
Pierre Lindenbaum
161k
$ cat input.rs
rs11203366
rs11203367
rs874881
rs776453694
rs80324279
rs324420
rs112766203
wget -…
Comment: Highest variable features in single cell data
by
ATpoint
82k
> and these cells are not even in a single cluster.
What does this mean? If you run clustering on all cells then every cell is assigned t…
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas
by
Bertalan_Takacs
▴
90
Yes, I can tell that, but as far as I see it doesn't contain any other information about the genomes, such as if they were representative i…
Answer: Hide positions in alignment with 99% "–" characters to ignore single sequence in
by
b.contreras.moreira
▴
170
You can try <https://github.com/inab/trimal>
Comment: To get p-values for the TPM
by
VITALA
•
0
yes i want what rsem does and i did try with prior-enhanced option/pRSEM, but i think pRSEM is for chipseq data
Comment: alignment result
by
ahmad.sajad4541
•
0
Thank you so much. Should i proceed for annotation step?
Comment: PCA plot (Suggestions Needed)
by
swbarnes2
14k
The code you already posted in the bioconductor board had simulated data, and the PCA image is the same.
Traffic: 2705 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6