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219
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Comment:
Comment: High number of detected genes per cell after doublet removal - scRNAseq data
2 days ago by
sarahmanderni
▴ 100
0
votes
0
replies
219
views
Comment:
Comment: High number of detected genes per cell after doublet removal - scRNAseq data
2 days ago by
sarahmanderni
▴ 100
0
votes
3
replies
219
views
High number of detected genes per cell after doublet removal - scRNAseq data
scRNAseq
duoblet
2 days ago by
sarahmanderni
▴ 100
0
votes
0
replies
404
views
Comment:
Comment: Single cluster spanning in different locations in UMAP in scRNAseq data
8 days ago by
sarahmanderni
▴ 100
4
votes
3
replies
404
views
Single cluster spanning in different locations in UMAP in scRNAseq data
UMAP
scRNAseq
8 days ago by
sarahmanderni
▴ 100
0
votes
1
reply
330
views
Comment:
Comment: scRNAseq normalization
10 days ago by
sarahmanderni
▴ 100
1
vote
1
reply
178
views
Seurat 5 integration
integration
seurat
updated 10 days ago by
jared.andrews07
★ 16k • written 10 days ago by
sarahmanderni
▴ 100
3
votes
5
replies
330
views
scRNAseq normalization
scRNA-seq
SCT
updated 10 days ago by
ATpoint
81k • written 10 days ago by
sarahmanderni
▴ 100
3
votes
3
replies
266
views
quality control scRNAseq
scRNAseq
qc
updated 16 days ago by
jv
★ 1.7k • written 17 days ago by
sarahmanderni
▴ 100
1
vote
1
reply
226
views
T2T chm13 fasta and annotation files
NGS
T2T-chm13
reference-genome
updated 5 weeks ago by
Darked89
4.6k • written 5 weeks ago by
sarahmanderni
▴ 100
0
votes
0
replies
279
views
Atac-seq shift single-end data
single-end
atac-seq
updated 3 months ago by
Ram
43k • written 3 months ago by
sarahmanderni
▴ 100
0
votes
0
replies
876
views
Comment:
Comment: scRNA-seq quality control
4 months ago by
sarahmanderni
▴ 100
0
votes
0
replies
876
views
Comment:
Comment: scRNA-seq quality control
4 months ago by
sarahmanderni
▴ 100
0
votes
4
replies
876
views
scRNA-seq quality control
qc
scrnaseq
updated 4 months ago by
jv
★ 1.7k • written 4 months ago by
sarahmanderni
▴ 100
1
vote
0
replies
271
views
Input data matrix from Seurat toolkit analysis for RNA velocity analysis using scvelo
seurat
velocity
scvelo
scrnaseq
5 months ago by
sarahmanderni
▴ 100
0
votes
1
reply
497
views
Comment:
Comment: Visualisation of accessible regions in single cell atacseq data
6 months ago by
sarahmanderni
▴ 100
5
votes
3
replies
497
views
Visualisation of accessible regions in single cell atacseq data
visualization
scATAC-seq
single-cell
updated 6 months ago by
Ram
43k • written 6 months ago by
sarahmanderni
▴ 100
1
vote
2
replies
920
views
Jupyter notebook installation
Jupyter
updated 2 days ago by
chictu
▴ 10 • written 7 months ago by
sarahmanderni
▴ 100
0
votes
0
replies
1.0k
views
Comment:
Comment: New mouse reference genome (GRCm39/mm39)
updated 7 months ago by
Ram
43k • written 7 months ago by
sarahmanderni
▴ 100
0
votes
3
replies
1.0k
views
New mouse reference genome (GRCm39/mm39)
reference-genome
mm39
updated 7 months ago by
Ram
43k • written 7 months ago by
sarahmanderni
▴ 100
0
votes
1
reply
717
views
Comment:
Comment: bamCoverage fails in bam files with large number of small contigs in headers
7 months ago by
sarahmanderni
▴ 100
0
votes
1
reply
717
views
Comment:
Comment: bamCoverage fails in bam files with large number of small contigs in headers
7 months ago by
sarahmanderni
▴ 100
0
votes
5
replies
717
views
bamCoverage fails in bam files with large number of small contigs in headers
bamCoverage
updated 7 months ago by
colindaven
6.3k • written 7 months ago by
sarahmanderni
▴ 100
0
votes
1
reply
1.9k
views
Comment:
Comment: RNA-seq de novo assembly alignment quality assessment
2.9 years ago by
sarahmanderni
▴ 100
0
votes
1
reply
1.9k
views
Comment:
Comment: RNA-seq de novo assembly alignment quality assessment
2.9 years ago by
sarahmanderni
▴ 100
0
votes
1
reply
1.9k
views
Comment:
Comment: RNA-seq de novo assembly alignment quality assessment
2.9 years ago by
sarahmanderni
▴ 100
9
votes
9
replies
1.9k
views
RNA-seq de novo assembly alignment quality assessment
trinity
rnaseq
denovo
assembly
2.9 years ago by
sarahmanderni
▴ 100
0
votes
1
reply
2.9k
views
Microarray batch effect correction
Microarray
Batch effect
updated 6.5 years ago by
Kevin Blighe
87k • written 6.6 years ago by
sarahmanderni
▴ 100
0
votes
1
reply
26k
views
Comment:
C: TMM normalization factors in RNA-seq analysis
6.6 years ago by
sarahmanderni
▴ 100
0
votes
0
replies
26k
views
Comment:
C: TMM normalization factors in RNA-seq analysis
6.6 years ago by
sarahmanderni
▴ 100
0
votes
0
replies
26k
views
Comment:
C: TMM normalization factors in RNA-seq analysis
6.6 years ago by
sarahmanderni
▴ 100
11
votes
8
replies
26k
views
TMM normalization factors in RNA-seq analysis
RNA-Seq
TMM normalization
updated 6.6 years ago by
h.mon
35k • written 6.6 years ago by
sarahmanderni
▴ 100
14
votes
11
replies
12k
views
6 follow
Paired-End Bam Files
paired-end
bam
updated 8.1 years ago by
Shicheng Guo
★ 9.4k • written 10.1 years ago by
sarahmanderni
▴ 100
0
votes
1
reply
1.6k
views
Comment:
C: mRNA expression levels association
8.3 years ago by
sarahmanderni
▴ 100
3
votes
4
replies
1.6k
views
mRNA expression levels association
RNA-Seq
updated 8.3 years ago by
TriS
★ 4.7k • written 8.3 years ago by
sarahmanderni
▴ 100
6
votes
3
replies
2.0k
views
Borrow Information Between Genes In Rna-Seq Analysis Methods
rna-seq
updated 8.5 years ago by
Biostar
20 • written 10.0 years ago by
sarahmanderni
▴ 100
0
votes
1
reply
3.9k
views
Comment:
C: TopHat with older versions of Bowtie
9.8 years ago by
sarahmanderni
▴ 100
3
votes
3
replies
3.9k
views
TopHat with older versions of Bowtie
bowtie
Tophat
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
sarahmanderni
▴ 100
7
votes
1
reply
8.8k
views
Reference genome for mapping RNA-seq spike-in dataset
RNA-Seq
alignment
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
sarahmanderni
▴ 100
1
vote
1
reply
2.2k
views
Sample clustering based on gene expression
cluster
gene expression
updated 9.9 years ago by
Irsan
★ 7.8k • written 9.9 years ago by
sarahmanderni
▴ 100
1
vote
4
replies
1.9k
views
Retrieving Information From Ensembl Without Knowing The Speices
ensembl
updated 10.0 years ago by
Emily
23k • written 10.0 years ago by
sarahmanderni
▴ 100
0
votes
1
reply
3.2k
views
Comment:
C: Gene-Specific Normalization In Rna-Seq
10.0 years ago by
sarahmanderni
▴ 100
0
votes
1
reply
3.2k
views
Comment:
C: Gene-Specific Normalization In Rna-Seq
10.0 years ago by
sarahmanderni
▴ 100
7
votes
5
replies
3.2k
views
Gene-Specific Normalization In Rna-Seq
normalization
rna-seq
updated 10.0 years ago by
Devon Ryan
104k • written 10.0 years ago by
sarahmanderni
▴ 100
0
votes
1
reply
2.0k
views
Comment:
C: Borrow Information Between Genes In Rna-Seq Analysis Methods
10.0 years ago by
sarahmanderni
▴ 100
0
votes
1
reply
3.3k
views
Comment:
C: Detection Of Alignment Algorithm Based On Bam Files
10.1 years ago by
sarahmanderni
▴ 100
5
votes
3
replies
3.3k
views
Detection Of Alignment Algorithm Based On Bam Files
alignment
bam
updated 10.1 years ago by
lomereiter
▴ 490 • written 10.1 years ago by
sarahmanderni
▴ 100
0
votes
1
reply
6.0k
views
Comment:
C: How To Convert Hgnc Gene Symbols To Gene Full Description?
10.1 years ago by
sarahmanderni
▴ 100
4
votes
3
replies
6.0k
views
How To Convert Hgnc Gene Symbols To Gene Full Description?
conversion
updated 10.1 years ago by
Neilfws
49k • written 10.1 years ago by
sarahmanderni
▴ 100
0
votes
0
replies
12k
views
Comment:
C: Paired-End Bam Files
10.1 years ago by
sarahmanderni
▴ 100
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