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comments
0
votes
0
replies
288
views
Comment:
Comment: Problem with survival analysis with gene symbols containing hyphen
6 weeks ago by
nazaninhoseinkhan
▴ 520
1
vote
2
replies
288
views
Problem with survival analysis with gene symbols containing hyphen
R
Survival-analysis
6 weeks ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
689
views
Comment:
Comment: Problem in batch effecting by DeSeq2
16 months ago by
nazaninhoseinkhan
▴ 520
2
votes
3
replies
689
views
Problem in removing batch effect by DeSeq2
removing
effects
DeSeq2
batch
colData
updated 16 months ago by
ATpoint
81k • written 16 months ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
488
views
Comment:
Comment: Can a pathogenic mutation results in the up-regulation of a gene?
22 months ago by
nazaninhoseinkhan
▴ 520
0
votes
2
replies
488
views
Can a pathogenic mutation results in the up-regulation of a gene?
mutation-up-regulation
Pathogenic
22 months ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
439
views
"read error; binarycodec in readmode" error in HMMRATAC
BAM
HMMRATAC
updated 10 months ago by
Ram
43k • written 2.2 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
373
views
How can I get plate information for a single cell sequencing dataset
sequencing
cell
single
plate
information
2.4 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
861
views
Comment:
Comment: Why only reverse fatsq file is used for mapping step in single cell RNA sequenci
2.4 years ago by
nazaninhoseinkhan
▴ 520
3
votes
3
replies
861
views
Why only reverse fatsq file is used for mapping step in single cell RNA sequencing analysis?
ScRNA-Seq
updated 12 months ago by
Ram
43k • written 2.4 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
503
views
EnsemblVEP could not generate any output for a list of frameshift insertion input
Frame_Shift_Insertion
EnsemblVEP
2.7 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
503
views
Answer:
Answer: EnsemblVEP could not generate any output for a list of frameshift insertion inpu
2.7 years ago by
nazaninhoseinkhan
▴ 520
0
votes
3
replies
1.7k
views
conversion of case_ids to file_ids TCGA data
TCGA
case_ids conversion
updated 2.7 years ago by
adebola.1
• 0 • written 4.8 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
1.7k
views
Comment:
Comment: conversion of case_ids to file_ids TCGA data
2.7 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
743
views
Comment:
Comment: Matching the file names with exposure file in TCGA
2.7 years ago by
nazaninhoseinkhan
▴ 520
0
votes
2
replies
743
views
Matching the file names with exposure file in TCGA
FPKM
exposure
TCGA
updated 12 months ago by
Ram
43k • written 2.7 years ago by
nazaninhoseinkhan
▴ 520
7
votes
18
replies
5.5k
views
problem in matching the names between file names and patients Id in TCGA
TCGA
CNV
problem in matching
updated 3.1 years ago by
HB
▴ 30 • written 5.8 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
2.1k
views
module membership p-value cutoff
wgcna
module membership p-value
cutoff
updated 3.1 years ago by
Biostar
20 • written 6.5 years ago by
nazaninhoseinkhan
▴ 520
26
votes
57
replies
8.1k
views
how to generate CNV plot from VEP results
copy number alteration
VEP
CNV plot
updated 3.2 years ago by
Ram
43k • written 5.5 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
1.3k
views
Comment:
C: Methylation-Gene expression correlation
3.6 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
1.3k
views
Comment:
C: Methylation-Gene expression correlation
3.6 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
1.3k
views
Comment:
C: Methylation-Gene expression correlation
3.6 years ago by
nazaninhoseinkhan
▴ 520
1
vote
6
replies
1.3k
views
Methylation-Gene expression correlation
DNA methylation
Gene expression
Correlation
updated 3.6 years ago by
Kevin Blighe
87k • written 3.6 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
1.4k
views
Comment:
C: visualizing mutational data using Maftools for reference genome hg19
3.6 years ago by
nazaninhoseinkhan
▴ 520
1
vote
3
replies
1.4k
views
visualizing mutational data using Maftools for reference genome hg19
hg19
visualize
Maftools
SNV
3.6 years ago by
nazaninhoseinkhan
▴ 520
2
votes
2
replies
2.0k
views
How to find targets for large number of lncRNAs
lncRNA targets
updated 3.8 years ago by
Biostar
20 • written 7.5 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
2.5k
views
Comment:
C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.9 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
2.5k
views
Comment:
C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.9 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
2.5k
views
Comment:
C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.9 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
2.5k
views
Comment:
C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.9 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
2.5k
views
Comment:
C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.9 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
2.5k
views
Comment:
C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.9 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
2.5k
views
Comment:
C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.9 years ago by
nazaninhoseinkhan
▴ 520
1
vote
18
replies
2.5k
views
Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip"
Negative expression values
updated 3.9 years ago by
Kevin Blighe
87k • written 3.9 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
2.5k
views
Comment:
A: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.9 years ago by
nazaninhoseinkhan
▴ 520
1
vote
0
replies
739
views
Comment:
C: several copy number alterations in the same position in an individual
3.9 years ago by
nazaninhoseinkhan
▴ 520
2
votes
3
replies
739
views
several copy number alterations in the same position in an individual
SCNA
updated 3.9 years ago by
Ram
43k • written 3.9 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
1.2k
views
Comment:
C: MUC5AC is not present in deseq2 results
4.0 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
1.2k
views
Comment:
C: MUC5AC is not present in deseq2 results
4.0 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
1.2k
views
Comment:
C: MUC5AC is not present in deseq2 results
4.0 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
1.2k
views
Comment:
C: MUC5AC is not present in deseq2 results
4.0 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
1.2k
views
Comment:
C: MUC5AC is not present in deseq2 results
4.0 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
1.2k
views
Comment:
C: MUC5AC is not present in deseq2 results
4.0 years ago by
nazaninhoseinkhan
▴ 520
3
votes
12
replies
1.2k
views
MUC5AC is not present in deseq2 results
RNA-Seq
Deseq2
MUC5AC
4.0 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
1.0k
views
How to specify pipelines(muse, mutect,...) in TCGAbiolinks when you want to use hg19?
TCGAbiolinks
mutations
pipelines selection
hg19
4.1 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
814
views
Comment:
C: What should I do when some probes of a gene is detected as hypomethylated and ot
4.2 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
814
views
Comment:
C: What should I do when some probes of a gene is detected as hypomethylated and ot
4.2 years ago by
nazaninhoseinkhan
▴ 520
2
votes
3
replies
814
views
What should I do when some probes of a gene is detected as hypomethylated and other probes of the same gene is hypermethylated
DNA methylation
hyper-hypomethyaltion
same gene
4.2 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
514
views
problem in finding follow_up samples belong to the same patients in TCGA
TCGA codes
follow_up samples
4.3 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
1.1k
views
Comment:
C: No mutations or copy number alterations was detected in stage I of cancer
4.3 years ago by
nazaninhoseinkhan
▴ 520
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