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5heikki ♦ 8.4k
Role: Moderator
Status: New
Handle: @5heikki9490
Reputation: 8420
Email: h*********@gmail.com
Joined: 14 months ago
Last seen: 14 months ago
Location: Finland

about me

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2
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1
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6.5k
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Answer: A: Extraction of first sequences from a big fasta file
5.5 years ago
5heikki 8.4k • updated 14 months ago
RamRS 21k
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1
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173
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Comment: C: Rename fasta headers from CSV
14 months ago
5heikki 8.4k
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1
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185
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Comment: C: intersection for several file
15 months ago
5heikki 8.4k
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0
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233
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Comment: C: What does it mean if a gene is not found in an assembly?
15 months ago
5heikki 8.4k
0
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1
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233
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Comment: C: What does it mean if a gene is not found in an assembly?
15 months ago
5heikki 8.4k
0
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2
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233
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Comment: C: What does it mean if a gene is not found in an assembly?
15 months ago
5heikki 8.4k
0
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1
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233
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Comment: C: What does it mean if a gene is not found in an assembly?
15 months ago
5heikki 8.4k
0
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1
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233
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Comment: C: What does it mean if a gene is not found in an assembly?
15 months ago
5heikki 8.4k
0
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245
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Answer: A: FastQC results interpretation
15 months ago
5heikki 8.4k
2
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2.1k
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Comment: C: Who are the Greatest Bioinformaticians Of All Time (GBOAT)
16 months ago
5heikki 8.4k
1
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5
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229
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What's going on with the NCBI ftp?
NCBI
16 months ago
5heikki 8.4k
0
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1
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2.1k
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Comment: C: Who are the Greatest Bioinformaticians Of All Time (GBOAT)
16 months ago
5heikki 8.4k
0
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1
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291
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Comment: C: Include STOP codon in getorf output
16 months ago
5heikki 8.4k
0
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0
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229
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Comment: C: What's going on with the NCBI ftp?
16 months ago
5heikki 8.4k
0
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1
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229
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Comment: C: What's going on with the NCBI ftp?
16 months ago
5heikki 8.4k
0
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0
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232
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Comment: C: Computer science grad student looking for advice/suggestions for master's thesis
16 months ago
5heikki 8.4k
0
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1
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402
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Comment: C: How to get a half correlation matrix?
17 months ago
5heikki 8.4k
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1
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222
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Comment: C: centos and bowtie2
17 months ago
5heikki 8.4k
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0
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505
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Comment: C: Can we consider Bioinformatics as a engineering discipline?
17 months ago
5heikki 8.4k
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1
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154
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Comment: C: Retrieving several bacteria CDS
17 months ago
5heikki 8.4k
1
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1
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154
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Comment: C: Retrieving several bacteria CDS
17 months ago
5heikki 8.4k
0
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1
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222
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Answer: A: centos and bowtie2
17 months ago
5heikki 8.4k
1
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1
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390
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Comment: C: Binning Tools for Long Reads/Contigs
17 months ago
5heikki 8.4k
0
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1
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390
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Comment: C: Binning Tools for Long Reads/Contigs
17 months ago
5heikki 8.4k
0
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1
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390
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Comment: C: Binning Tools for Long Reads/Contigs
17 months ago
5heikki 8.4k
1
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0
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182
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Comment: C: Blasting against all assemblies on NCBI without downloading the genomes
17 months ago
5heikki 8.4k
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360
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Comment: C: Are parasites good as model organisms?
17 months ago
5heikki 8.4k
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1
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360
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Comment: C: Are parasites finally good for something?
17 months ago
5heikki 8.4k
0
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1
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390
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Comment: C: Binning Tools for Long Reads/Contigs
17 months ago
5heikki 8.4k
2
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1
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242
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Answer: A: How to rename duplicate fasta headers after the first underscore '_'?
17 months ago
5heikki 8.4k
1
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0
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406
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Answer: A: How to create a tab delimited file?
17 months ago
5heikki 8.4k
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159
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Comment: C: Cross assembly of metagenomics
17 months ago
5heikki 8.4k
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426
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Comment: C: How to generate multiple sequence alignments from BLAST(stand alone BLAST) hits
17 months ago
5heikki 8.4k
3
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1
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262
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Answer: A: How do I get a single nucleotide from my BLAST alignment?
17 months ago
5heikki 8.4k
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262
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Comment: C: How do I get a single nucleotide from my BLAST alignment?
17 months ago
5heikki 8.4k
0
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2
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426
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Comment: C: How to generate multiple sequence alignments from BLAST(stand alone BLAST) hits
17 months ago
5heikki 8.4k
0
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1
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262
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Comment: C: How do I get a single nucleotide from my BLAST alignment?
17 months ago
5heikki 8.4k
0
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1
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426
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Comment: C: How to generate multiple sequence alignments from BLAST(stand alone BLAST) hits
17 months ago
5heikki 8.4k
0
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1
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426
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Comment: C: How to generate multiple sequence alignments from BLAST(stand alone BLAST) hits
17 months ago
5heikki 8.4k
1
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0
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215
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Comment: C: Roary MSG: Got a sequence without letters. Could not guess alphabet
17 months ago
5heikki 8.4k
1
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1
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240
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Comment: C: Local Blast Error
18 months ago
5heikki 8.4k
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1
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246
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Comment: C: BLAST Database error: No GIs were found in BLAST database
18 months ago
5heikki 8.4k
2
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208
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Answer: A: Shell script to reverse complement DNA, but with a twist (certain bases with a l
18 months ago
5heikki 8.4k
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0
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322
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Comment: C: Only one hit per query on blastn?
18 months ago
5heikki 8.4k
1
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0
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1.1k
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Answer: A: Survey: What colour theme do you use in your terminal?
18 months ago
5heikki 8.4k
2
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1
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16k
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Comment: C: BLAST, setting maximum number of hits
5.5 years ago
5heikki 8.4k • updated 18 months ago
RamRS 21k
6
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1
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16k
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Answer: A: BLAST, setting maximum number of hits
5.5 years ago
5heikki 8.4k • updated 18 months ago
RamRS 21k
0
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1
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224
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Answer: A: MS level RESEARCH IDEA
18 months ago
5heikki 8.4k
1
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0
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226
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Comment: C: Is there a way to segregate Plasmid contigs from Iontorrent WGS data?
18 months ago
5heikki 8.4k
1
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1
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226
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Answer: A: Is there a way to segregate Plasmid contigs from Iontorrent WGS data?
18 months ago
5heikki 8.4k
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0
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400
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Comment: C: Linearize fasta files
18 months ago
5heikki 8.4k
1
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1
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253
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Comment: C: 16S rRNA extraction of assembled genome bins
18 months ago
5heikki 8.4k
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0
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240
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Comment: C: Software to extract run information from FASTQ headers?
18 months ago
5heikki 8.4k
0
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1
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240
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Comment: C: Software to extract run information from FASTQ headers?
18 months ago
5heikki 8.4k
1
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1
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379
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Comment: C: How to extract the last 1000 nt from a group of sequences in a FASTA file?
18 months ago
5heikki 8.4k
1
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1
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379
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Answer: A: How to extract the last 1000 nt from a group of sequences in a FASTA file?
18 months ago
5heikki 8.4k
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0
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374
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Answer: A: Reduce number of reads from 100M to 50M in the sample from the existing RNA-Seq
18 months ago
5heikki 8.4k
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0
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202
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Answer: A: Metagenomics raw data to develop pipeline
18 months ago
5heikki 8.4k
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167
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Comment: C: MEGAN - no reads found
18 months ago
5heikki 8.4k
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269
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Comment: C: Senior Software Engineer
18 months ago
5heikki 8.4k
1
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282
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Answer: A: How to predict complementary nucleotide sequence?
18 months ago
5heikki 8.4k
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323
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Comment: C: Sorting out CD HiT output
18 months ago
5heikki 8.4k
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0
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291
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Comment: C: Include STOP codon in getorf output
18 months ago
5heikki 8.4k
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0
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291
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Comment: C: Include STOP codon in getorf output
18 months ago
5heikki 8.4k
0
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0
Replies
291
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Comment: C: Include STOP codon in getorf output
18 months ago
5heikki 8.4k
0
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2
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323
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Comment: C: Sorting out CD HiT output
18 months ago
5heikki 8.4k
2
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1
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286
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Answer: A: How To Rename FASTA Headers
18 months ago
5heikki 8.4k
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0
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323
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Answer: A: Sorting out CD HiT output
18 months ago
5heikki 8.4k
1
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1
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273
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Comment: C: How to write a code in Linux to manipulate a large file with grep/awk
18 months ago
5heikki 8.4k
3
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1
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304
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Comment: C: Bowtie2 mapped just 50% of the reads
19 months ago
5heikki 8.4k
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301
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Comment: C: Memory-driven computing accelerates genomic data processing
19 months ago
5heikki 8.4k
1
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302
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Comment: C: Metagenomics best reference DB
19 months ago
5heikki 8.4k
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0
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301
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Comment: C: Memory-driven computing accelerates genomic data processing
19 months ago
5heikki 8.4k
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302
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Comment: C: Metagenomics best reference DB
19 months ago
5heikki 8.4k
1
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1
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302
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Comment: C: Metagenomics best reference DB
19 months ago
5heikki 8.4k
2
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2
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302
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Answer: C: Metagenomics best reference DB
19 months ago
5heikki 8.4k
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2
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301
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Comment: C: Memory-driven computing accelerates genomic data processing
19 months ago
5heikki 8.4k
1
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301
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Forum: Memory-driven computing accelerates genomic data processing
HPC Forum
19 months ago
5heikki 8.4k
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328
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Comment: C: for loop over bwa aln
19 months ago
5heikki 8.4k
1
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1
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265
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Answer: A: blast against metagenome shotgun data - not getting the hits expected
19 months ago
5heikki 8.4k
0
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0
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353
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Answer: A: Career related query
20 months ago
5heikki 8.4k
0
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1
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334
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Comment: C: How can Investigate if a Viral genome is circular or linear? And if it is single
20 months ago
5heikki 8.4k
3
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1
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334
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Answer: A: How can Investigate if a Viral genome is circular or linear? And if it is single
20 months ago
5heikki 8.4k
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0
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237
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Comment: C: How do we call this phenomenon in evolution?
20 months ago
5heikki 8.4k
5
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4
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38k
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Comment: C: Download All The Bacterial Genomes From Ncbi
4.4 years ago
5heikki 8.4k • updated 20 months ago
RamRS 21k
2
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1
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997
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Comment: C: Binning of reads vs. binning of contigs in metagenomics
20 months ago
5heikki 8.4k
2
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1
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997
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Comment: C: Binning of reads vs. binning of contigs in metagenomics
21 months ago
5heikki 8.4k
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0
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253
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Comment: C: Don't understand the assignment - Artemis
21 months ago
5heikki 8.4k
1
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346
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Comment: C: standalone blast output to excel
22 months ago
5heikki 8.4k
1
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1
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234
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Answer: A: Is there a database of phylogenetic information?
22 months ago
5heikki 8.4k
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0
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1.8k
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Comment: C: Misunderstood parameter of NCBI BLAST
22 months ago
5heikki 8.4k
3
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1
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532
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Comment: C: -max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
22 months ago
5heikki 8.4k
4
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3
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532
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News: -max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
software error blast News
22 months ago
5heikki 8.4k • updated 22 months ago
Devon Ryan 90k
0
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0
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811
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Comment: C: Workstation : More RAM or Faster RAM
22 months ago
5heikki 8.4k
0
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1
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640
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Comment: C: Missing sequences in local NT database
22 months ago
5heikki 8.4k
1
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314
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Comment: C: primers for whole metagenome
22 months ago
5heikki 8.4k
1
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314
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Comment: C: primers for whole metagenome
22 months ago
5heikki 8.4k
1
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2
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640
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Comment: C: Missing sequences in local NT database
22 months ago
5heikki 8.4k
0
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2
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640
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Comment: C: Missing sequences in local NT database
22 months ago
5heikki 8.4k
0
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2
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640
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Comment: C: Missing sequences in local NT database
22 months ago
5heikki 8.4k
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