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How to annotate your vcf files with the GT (genotype) field
samtools mpileup vcf genotype sequencing
updated 2.3 years ago by • 0 • written 8.0 years ago by ▴ 990
6
votes
5
replies
3.7k
views
How Do You Align Or Compare Two Networks Content-Wise?
network graphs comparison
updated 3.1 years ago by 20 • written 13.4 years ago by ▴ 990
9
votes
4
replies
11k
views
samtools mpileup - how to extract the alternative allele counts for *each* alternative base
samtools mpileup alt mutation
updated 4.2 years ago by ▴ 10 • written 8.1 years ago by ▴ 990
0
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1
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1.9k
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Comment: C: bcftools call transforms the mpileup -3aag variant into a TAAGAAGA>TAAGA variant
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 990
1
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1
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6.2k
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Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 990
2
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0
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6.2k
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Answer: A: Mpileup BCF/VCF output without non-ref base 'X'?
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 990
0
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1
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6.2k
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Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 990
0
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0
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6.2k
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Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 990
0
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0
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6.2k
views
Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 990
0
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0
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26k
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Comment: C: Converting TCGA expression data from FPKM to TPM
updated 4.4 years ago by 43k • written 8.3 years ago by ▴ 990
0
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0
replies
14k
views
Comment: C: How To Convert Uniprot Ids To Ensemble Gene/Transcript Ids
updated 4.5 years ago by 43k • written 9.4 years ago by ▴ 990
0
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0
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8.5k
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Comment: C: Bioinformatics Posters Collection
updated 4.6 years ago by 43k • written 12.6 years ago by ▴ 990
1
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0
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5.6k
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Comment: C: Check Ancestry Relation Between Go Terms
updated 4.6 years ago by 43k • written 13.1 years ago by ▴ 990
3
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0
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15k
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Answer: A: Heatmap Visualisations?
updated 4.6 years ago by 43k • written 13.1 years ago by ▴ 990
2
votes
1
reply
20k
views
Answer: A: Bioinformatics "Cheat Sheet"
updated 4.6 years ago by 43k • written 13.1 years ago by ▴ 990
1
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0
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5.8k
views
Answer: A: Web Resources To Find Cancer Indication Where A Given Gene Is Amplified
updated 5.3 years ago by 43k • written 13.4 years ago by ▴ 990
0
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0
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13k
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Comment: C: Extracting Reads Containing A Specific Variant From A Bam File
5.8 years ago by Michi ▴ 990
1
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1
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12k
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Answer: A: Iterating through paired-end reads in samtools / pysam
5.8 years ago by Michi ▴ 990
0
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0
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5.2k
views
Comment: C: Sorting bed files with bash sort
updated 6.1 years ago by 43k • written 6.1 years ago by ▴ 990
0
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1
reply
3.5k
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Comment: C: General questions about running GSEAPreranked
6.1 years ago by Michi ▴ 990
0
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0
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9.4k
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Answer: A: How to find out the insert size in RNA seq data
6.1 years ago by Michi ▴ 990
0
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0
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1.9k
views
Comment: C: Custom genome and tophat
7.3 years ago by Michi ▴ 990
0
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1
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1.9k
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Comment: C: Custom genome and tophat
7.3 years ago by Michi ▴ 990
1
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4
replies
1.9k
views
Custom genome and tophat
sequencing RNA-Seq tophat
7.3 years ago by Michi ▴ 990
0
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0
replies
1.0k
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Single Gene-Fusion detection - resource effective approaches?
RNA-Seq gene-fusion alignment sequencing
7.3 years ago by Michi ▴ 990
1
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0
replies
8.8k
views
Answer: A: R -- Get Exonic Ranges Of A Gene'S Transcripts Given Its Name?
7.6 years ago by Michi ▴ 990
0
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1
reply
4.9k
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Comment: C: How to annotate your vcf files with the GT (genotype) field
8.0 years ago by Michi ▴ 990
0
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1
reply
4.9k
views
Comment: C: How to annotate your vcf files with the GT (genotype) field
8.0 years ago by Michi ▴ 990
0
votes
1
reply
46k
views
Comment: C: Tools to view fastq file
8.0 years ago by Michi ▴ 990
0
votes
1
reply
61k
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Comment: C: How To Sort Bed Format File
8.0 years ago by Michi ▴ 990
0
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0
replies
2.6k
views
Comment: C: Download link to ensembl human GRCH37 transcript support level (TSL) flags infor
8.1 years ago by Michi ▴ 990
0
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0
replies
11k
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Comment: C: samtools mpileup - how to extract the alternative allele counts for *each* alter
8.1 years ago by Michi ▴ 990
0
votes
1
reply
11k
views
Comment: C: samtools mpileup - how to extract the alternative allele counts for *each* alter
8.1 years ago by Michi ▴ 990
7
votes
15
replies
6.2k
views
Mpileup BCF/VCF output without non-ref base 'X'?
vcf mpileup sequencing bcf samtools
updated 20 months ago by 43k • written 8.5 years ago by ▴ 990
3
votes
3
replies
1.9k
views
bcftools call transforms the mpileup -3aag variant into a TAAGAAGA>TAAGA variant
mpileup sequencing samtools indel bcftools
updated 20 months ago by 43k • written 8.5 years ago by ▴ 990
0
votes
1
reply
6.2k
views
Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
8.5 years ago by Michi ▴ 990
0
votes
1
reply
6.2k
views
Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
8.5 years ago by Michi ▴ 990
0
votes
1
reply
6.2k
views
Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
8.5 years ago by Michi ▴ 990
0
votes
0
replies
2.2k
views
Comment: Comment: Samtools Mpileup With Refrence Addition
updated 20 months ago by 43k • written 8.5 years ago by ▴ 990
4
votes
3
replies
3.6k
views
Alignment plot of a small extract (sequence) from a .bam file
bam SNP sequencing plot alignment
updated 19 months ago by 43k • written 8.6 years ago by ▴ 990
0
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0
replies
43k
views
Comment: C: How To Create Mutation Diagram In R Or In Any Tools?
8.6 years ago by Michi ▴ 990
6
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1
reply
43k
views
Answer: Answer: How To Create Mutation Diagram In R Or In Any Tools?
updated 2.1 years ago by 43k • written 9.4 years ago by ▴ 990
0
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0
replies
1.4k
views
Answer: A: Advanced options Oncodrive
9.4 years ago by Michi ▴ 990
1
vote
0
replies
16k
views
Comment: Comment: Clustering Go Terms?
updated 2.1 years ago by 43k • written 9.4 years ago by ▴ 990
0
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1
reply
2.8k
views
Comment: C: PFAM domains for all protein Isoforms from same protein
9.4 years ago by Michi ▴ 990
1
vote
3
replies
2.8k
views
PFAM domains for all protein Isoforms from same protein
Isoforms uniprot protein-domain pfam
updated 2.1 years ago by 43k • written 9.4 years ago by ▴ 990
0
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0
replies
3.8k
views
Comment: Comment: Finding Gff File For All Uniprot Protein Isoform Domain Annotations
updated 2.1 years ago by 43k • written 9.4 years ago by ▴ 990
1
vote
0
replies
2.3k
views
Comment: Comment: Old releases of NCBI Gene (annotation)
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 990
5
votes
2
replies
2.3k
views
Old releases of NCBI Gene (annotation)
Gene mapping
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 990
7
votes
0
replies
4.7k
views
Tutorial: How To Perform A Hierarchical Clustering Using Interactive Heatmaps From Gitools?
clustering
updated 13 months ago by 43k • written 10.1 years ago by ▴ 990
91 results • Page 1 of 2
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