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2
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1
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1.3k
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Answer: Answer: Understanding 1/1 output in VCF
16 months ago by karl.stamm 4.1k
0
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0
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1.0k
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Comment: Comment: What are the values shown on DESEQ2 heatmap legend?
20 months ago by karl.stamm 4.1k
0
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1
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2.1k
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Comment: Comment: AF = 0.5 in chrX, VCF of a male
20 months ago by karl.stamm 4.1k
1
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0
replies
731
views
Answer: Answer: What are the data values in qRT-PCR for statistical testing? dCT? or 2^-dCT?
22 months ago by karl.stamm 4.1k
0
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0
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622
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Comment: Comment: Why am I getting same linear regression lines for 'x' on 'y' and 'y' on 'x'?
23 months ago by karl.stamm 4.1k
1
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1
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748
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Comment: Comment: PCA does not show distinction in groups
2.1 years ago by karl.stamm 4.1k
0
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0
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1.8k
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Comment: Comment: Non biology & computer professional interested in bioinformatics
2.5 years ago by karl.stamm 4.1k
0
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1
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1.8k
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Answer: Answer: Non biology & computer professional interested in bioinformatics
2.5 years ago by karl.stamm 4.1k
0
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0
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777
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Answer: Answer: RSQLite slowness
2.5 years ago by karl.stamm 4.1k
0
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1
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870
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Comment: Comment: probability of two samples sharing a SNP by error
2.6 years ago by karl.stamm 4.1k
1
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0
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5.3k
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Answer: Answer: Why does my t-test fail?
updated 2.6 years ago by 43k • written 2.6 years ago by 4.1k
0
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1
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2.0k
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Comment: Comment: SNP Pruning Through PCA
2.7 years ago by karl.stamm 4.1k
1
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0
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718
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Comment: Comment: Advise for a computational neophyte
2.7 years ago by karl.stamm 4.1k
4
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1
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942
views
Answer: Answer: RNA-seq for samples with RIN<3
2.7 years ago by karl.stamm 4.1k
3
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0
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860
views
Answer: Answer: How to select columns from a dataframe of which the name ends with a specific wo
2.8 years ago by karl.stamm 4.1k
0
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0
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856
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Comment: C: On understanding the axis of a PCA plot
3.1 years ago by karl.stamm 4.1k
0
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1
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1.2k
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Comment: C: [RNA-seq] Extremely Unconsistent Raw Count from Different Tools; a dark mistery
3.1 years ago by karl.stamm 4.1k
0
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0
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2.5k
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Comment: C: A question on the interpretation of a PCA plot
3.1 years ago by karl.stamm 4.1k
0
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1
reply
931
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Comment: C: Very high ratio of cases to controls - how to increase statistical power?
3.2 years ago by karl.stamm 4.1k
0
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1
reply
931
views
Comment: C: Very high ratio of cases to controls - how to increase statistical power?
3.2 years ago by karl.stamm 4.1k
0
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1
reply
794
views
Comment: C: Problems with the same gene names in R, any help?
3.2 years ago by karl.stamm 4.1k
0
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0
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4.8k
views
Comment: C: PEPATAC error: ConnectionResetError: [Errno 104] Connection reset by peer
3.2 years ago by karl.stamm 4.1k
0
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0
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6.7k
views
Comment: C: How to handle duplicate row names in R
3.3 years ago by karl.stamm 4.1k
0
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0
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892
views
Answer: A: How to map reads onto human hg38 gene body regions instead of whole genome?
3.3 years ago by karl.stamm 4.1k
0
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1
reply
1.0k
views
Answer: A: Loading Matrices of 10X Genomics failed
3.3 years ago by karl.stamm 4.1k
0
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0
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1.7k
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Comment: C: During RNA-seq analysis a lot of pseudogenes come up as DE
3.3 years ago by karl.stamm 4.1k
1
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0
replies
3.8k
views
Comment: C: What are the 5 biggest challenges/ opportunities in Bioinformatics going into 20
3.3 years ago by karl.stamm 4.1k
0
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0
replies
2.4k
views
Comment: C: Is there a tool to predict if a missense variant causes a loss of function on th
3.3 years ago by karl.stamm 4.1k
0
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1
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2.5k
views
Comment: C: A question on the interpretation of a PCA plot
3.3 years ago by karl.stamm 4.1k
0
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0
replies
980
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Comment: C: Optimal Number of SNPs in NA12878 WES Data
3.3 years ago by karl.stamm 4.1k
0
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1
reply
980
views
Comment: C: Optimal Number of SNPs in NA12878 WES Data
3.3 years ago by karl.stamm 4.1k
0
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1
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594
views
Comment: C: Mapping transcriptomes against each other to find genetic differences
3.4 years ago by karl.stamm 4.1k
1
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1
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2.2k
views
Answer: A: Read depth maxing out at about 8000
3.4 years ago by karl.stamm 4.1k
0
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0
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1.4k
views
Comment: C: Convert R script to python(implementation of the UPGMA OR neighbor joining algor
3.4 years ago by karl.stamm 4.1k
0
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0
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1.2k
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Comment: C: Transforming big file
3.4 years ago by karl.stamm 4.1k
0
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1
reply
1.2k
views
Comment: C: Transforming big file
3.4 years ago by karl.stamm 4.1k
1
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0
replies
1.3k
views
Answer: A: Is there a way to map long fasta reads to short reference sequences?
3.4 years ago by karl.stamm 4.1k
1
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0
replies
865
views
Comment: C: Wes analysis - Quality control on sequenced data
3.4 years ago by karl.stamm 4.1k
0
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1
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697
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Comment: C: What is the smallest number of cases you can have in a GWAS before interpretatio
3.4 years ago by karl.stamm 4.1k
0
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1
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4.4k
views
Comment: C: how do I find the genes which are common to and those which differ between multi
3.4 years ago by karl.stamm 4.1k
0
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0
replies
3.4k
views
Comment: C: Why is gnomAD AF vs gnomAD exome AF so different?
3.4 years ago by karl.stamm 4.1k
0
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0
replies
1.0k
views
Comment: C: How to do a multi-snp/haplotype based GWAS instead of a single snp GWAS in R?
3.5 years ago by karl.stamm 4.1k
0
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1
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1.9k
views
Comment: C: Interpreting theta value
3.5 years ago by karl.stamm 4.1k
0
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1
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1.0k
views
Comment: C: How to do a multi-snp/haplotype based GWAS instead of a single snp GWAS in R?
3.5 years ago by karl.stamm 4.1k
1
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1
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1.3k
views
Answer: A: Multiple plots using for loops in R
3.5 years ago by karl.stamm 4.1k
0
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0
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1.2k
views
Comment: C: Publicly Available RNA-Seq Datasets from Human Heart
3.5 years ago by karl.stamm 4.1k
0
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0
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1.0k
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Comment: C: Should we Ignore heterozygous SNPs while constructing SNP based phylogeny
3.5 years ago by karl.stamm 4.1k
0
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0
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1.1k
views
Answer: A: How to a make schematic picture for RNA-seq steps
3.5 years ago by karl.stamm 4.1k
1
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0
replies
1.1k
views
Answer: A: Help understanding bcftools call genotyping decision
3.6 years ago by karl.stamm 4.1k
0
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1
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975
views
Comment: C: Genes inhibiting each other's expression
3.6 years ago by karl.stamm 4.1k
508 results • Page 1 of 11
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