ivivek_ngs ♦ 4.8k
Status: New
Handle: @ivivek_ngs8620
Reputation: 4780
Email: v*********@gmail.com
Joined: 7 months ago
Twitter: @ivivek87
Last seen: 7 months ago
Location: Seattle,WA, USA

I did my PhD in the field of Cancer Computational Medicine employing NGS tools(publicly available) or ad-hoc development and analyzing them. Mostly I did bench-marking of tools till I find the best fit for the heterogeneous cancer data. I worked on integrating multi omics data and briefly ventured in field of single cell which is pretty interesting to me as of now (still working on it as per requirement in the industry).

Battling with two of my worst fears Biology and Computer Science to give life a better meaning. My first fear made me push to get the PhD and my second help me learn to solve problems amassing big-data, in an unbiased data-driven way, thus letting me earn my PhD. Now I want to drive the improvements in the field of healthcare bridging both Biology and Computer Science. I enjoy the interdisciplinary terms Bioinformatics or Computational Biology, but in heart  and mind, I am a Systems Biologist who loves learning data-shapes, distributions , what it provides as features and these can help formulate better biological queries and also address apriori queries or new ones. The challenge in life science and technology drives me and so I am pursuing the research field.

Everyday is a new learning and knowledge is never ending.

Biostars helped me learn all along and now with my experience and learning am happy to help others. 

Creating automated pipeline/workflow scripts for easy usage of different seq technologies. I am passionate about integration of multi-omics data in varied therapeutic areas involving human patients data-sets and leveraging the power of pre-clinical animal models together for target discovery. 

I am interested in Precision and Personalized Medicine and would like to use my skills in the same with translational NGS technologies for addressing problems related to diseases. Currently working in industry in Biomarkers & Target Discovery employing Integrative Computational Systems Medicine approach.

How To Remove Rows In A Matrix Having 0 As Value In Columns In Both Conditions
2 Votes | 12 Replies
6.1 years ago
ivivek_ngs
♦ 4.8k
• updated 7 months ago
cigdemselli
• 10
Comment: C: Interesting bioinformatics blogs (2017 edition)
1 Vote | 0 Replies
7 months ago
ivivek_ngs
♦ 4.8k
Comment: C: How to create a heatmap of RNA-Seq Data in R?
0 Votes | 0 Replies
9 months ago
ivivek_ngs
♦ 4.8k
Comment: C: Do you recommend marking duplicates for WGS or WES?
1 Vote | 0 Replies
10 months ago
ivivek_ngs
♦ 4.8k
Comment: C: Batch correction: Before and After Visualisation
0 Votes | 0 Replies
10 months ago
ivivek_ngs
♦ 4.8k
Comment: C: Data selection for RNA-seq data analysis
1 Vote | 0 Replies
10 months ago
ivivek_ngs
♦ 4.8k
Answer: A: Data selection for RNA-seq data analysis
2 Votes | 1 Reply
10 months ago
ivivek_ngs
♦ 4.8k
Comment: C: Batch correction: Before and After Visualisation
0 Votes | 1 Reply
10 months ago
ivivek_ngs
♦ 4.8k
Answer: A: Tools for qRT-PCR data analysis
1 Vote | 0 Replies
10 months ago
ivivek_ngs
♦ 4.8k
Comment: C: Subsampling aligned SAM/BAM files for RNA-seq analysis
0 Votes | 0 Replies
10 months ago
ivivek_ngs
♦ 4.8k
Comment: C: removeBatchEffect with or without log2 values
0 Votes | 0 Replies
10 months ago
ivivek_ngs
♦ 4.8k
Answer: A: removeBatchEffect with or without log2 values
2 Votes | 1 Reply
10 months ago
ivivek_ngs
♦ 4.8k
Comment: C: How to create multiple density plots in one
0 Votes | 0 Replies
11 months ago
ivivek_ngs
♦ 4.8k
Comment: C: Annotating variants with Annovar, Oncotator and SnpEFF
0 Votes | 2 Replies
5.2 years ago
ivivek_ngs
♦ 4.8k
• updated 15 months ago
RamRS
21k
Answer: A: Is there a database which gives meta-level information of mutation(both nuclueot
0 Votes | 1 Reply
3.9 years ago
ivivek_ngs
♦ 4.8k
• updated 16 months ago
RamRS
21k
Comment: C: GO analysis: DAVID vs GREAT vs GOrilla
0 Votes | 1 Reply
3.9 years ago
ivivek_ngs
♦ 4.8k
• updated 16 months ago
RamRS
21k
Answer: A: Problem In running read.Table function in R
3 Votes | 0 Replies
3.9 years ago
ivivek_ngs
♦ 4.8k
• updated 16 months ago
RamRS
21k
Comment: C: Problem In running read.Table function in R
1 Vote | 0 Replies
3.9 years ago
ivivek_ngs
♦ 4.8k
• updated 16 months ago
RamRS
21k
Comment: C: Problem In running read.Table function in R
1 Vote | 0 Replies
3.9 years ago
ivivek_ngs
♦ 4.8k
• updated 16 months ago
RamRS
21k
Answer: A: Probability of up/downregulation occuring by chance
1 Vote | 0 Replies
3.9 years ago
ivivek_ngs
♦ 4.8k
• updated 16 months ago
RamRS
21k
Answer: A: Generating an ADMIXTURE plot that stacks the different values of K using R
0 Votes | 1 Reply
3.9 years ago
ivivek_ngs
♦ 4.8k
• updated 16 months ago
RamRS
21k
Answer: A: defining function of list of genes
1 Vote | 1 Reply
3.9 years ago
ivivek_ngs
♦ 4.8k
• updated 16 months ago
RamRS
21k
Answer: A: How to identify consecutive (adjacent) genomic intervals
0 Votes | 0 Replies
3.9 years ago
ivivek_ngs
♦ 4.8k
• updated 16 months ago
RamRS
21k
Answer: A: package R for vcf file ??
1 Vote | 0 Replies
3.9 years ago
ivivek_ngs
♦ 4.8k
• updated 16 months ago
RamRS
21k
Answer: A: RNA seq results as fpkm
1 Vote | 0 Replies
3.9 years ago
ivivek_ngs
♦ 4.8k
• updated 16 months ago
RamRS
21k
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