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Answer: A: Filtering VCF file by INFO flag
7.1 years ago by Shane McCarthy ▴ 370
2
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Job: Genomics Data Scientist - Sanger Institute, Cambridge, UK
Assembly Genome
updated 12 months ago by 43k • written 7.7 years ago by ▴ 370
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Answer: A: getting GQ values with VCF using SAMTOOLS Mpileup
7.9 years ago by Shane McCarthy ▴ 370
5
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Comment: C: samtools mpileup VCF output
8.0 years ago by Shane McCarthy ▴ 370
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Answer: A: BCF file is too big? (from 3,73 GB sorted.bam file to over 200 GB BCF)
8.0 years ago by Shane McCarthy ▴ 370
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Answer: A: 1000 genomes project mitochondrial DNA sequences
8.0 years ago by Shane McCarthy ▴ 370
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Answer: A: samtools mpileup - how to extract the alternative allele counts for *each* alter
8.1 years ago by Shane McCarthy ▴ 370
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Comment: C: VCF to genotype file of specific format
8.1 years ago by Shane McCarthy ▴ 370
3
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3.9k
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Answer: A: VCF to genotype file of specific format
8.1 years ago by Shane McCarthy ▴ 370
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Answer: A: A tool to annotate one VCF file with INFO records of another VCF taking SNP into
8.2 years ago by Shane McCarthy ▴ 370
2
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3.6k
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Answer: A: BCFTools view equivelent of GATK -T SelectVariants -sn sample_x --excludeNonVari
8.5 years ago by Shane McCarthy ▴ 370
3
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Answer: Answer: bsctools merge on duplicate samples
updated 18 months ago by 43k • written 8.7 years ago by ▴ 370
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Comment: Comment: How to process 1000GP data
updated 23 months ago by 43k • written 9.1 years ago by ▴ 370
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Comment: C: Samtofastq: Net.Sf.Picard.Picardexception: "Found N Unpaired Mates "
11.0 years ago by Shane McCarthy ▴ 370
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