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19
votes
14
replies
85k
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10 follow
BLAST Database error: No alias or index file found for nucleotide database
blast blastn sift makeblastdb
updated 6 months ago by • 0 • written 9.5 years ago by ▴ 320
0
votes
1
reply
4.0k
views
Comment: C: multithreading in psiblast
updated 4.3 years ago by 43k • written 9.8 years ago by ▴ 320
6
votes
5
replies
8.2k
views
Find Sequences In Fasta File From List Of Id'S
biopython bioperl
updated 6.2 years ago by • 0 • written 11.0 years ago by ▴ 320
9
votes
6
replies
6.1k
views
Pyfasta Split By Header
python
updated 6.3 years ago by ▴ 200 • written 10.4 years ago by ▴ 320
8
votes
7
replies
13k
views
Trying To Run Psipred But Failing To Use Blastpgp
blast+
updated 6.5 years ago by • 0 • written 11.0 years ago by ▴ 320
5
votes
3
replies
11k
views
Convert SNPs from GrCh38 to 37
SNP grch38 grch37 mapping
updated 6.6 years ago by ★ 4.9k • written 6.6 years ago by ▴ 320
0
votes
0
replies
1.9k
views
Comment: C: merging humsavar dataset with UniprotKB human variation
6.6 years ago by arronslacey ▴ 320
0
votes
2
replies
1.9k
views
merging humsavar dataset with UniprotKB human variation
SNP uniprot ensembl swissprot annovar
updated 6.6 years ago by ▴ 40 • written 6.6 years ago by ▴ 320
1
vote
1
reply
2.1k
views
Any Ideas To Increase Hmm Classification Accuracy Of Two Groups Of Proteins?
protein hmm
updated 7.4 years ago by 20 • written 10.5 years ago by ▴ 320
1
vote
2
replies
2.0k
views
drug response variant datasets
snp drug response variant biobase
updated 7.4 years ago by ▴ 310 • written 7.6 years ago by ▴ 320
0
votes
0
replies
2.0k
views
Comment: C: chromosomal locations of snps in humvar variant set
8.0 years ago by arronslacey ▴ 320
2
votes
2
replies
2.0k
views
chromosomal locations of snps in humvar variant set
snp variation humvar uniprot
updated 8.0 years ago by ★ 2.3k • written 8.0 years ago by ▴ 320
2
votes
1
reply
2.3k
views
how can I obtain benign / neutral snps?
snp annovar dbnfsp dbsnp mysql
updated 8.0 years ago by 47k • written 8.0 years ago by ▴ 320
0
votes
1
reply
4.3k
views
Comment: C: Multiple annotations using annovar?
8.1 years ago by arronslacey ▴ 320
0
votes
0
replies
4.3k
views
Comment: C: Multiple annotations using annovar?
8.1 years ago by arronslacey ▴ 320
3
votes
4
replies
4.3k
views
Multiple annotations using annovar?
annovar annotation variant
updated 8.1 years ago by 13k • written 8.1 years ago by ▴ 320
0
votes
1
reply
3.5k
views
Answer: A: help with installation of psipred
8.1 years ago by arronslacey ▴ 320
0
votes
0
replies
1.8k
views
Comment: C: --maf_exac flag not found in VEP77
8.1 years ago by arronslacey ▴ 320
3
votes
2
replies
1.8k
views
--maf_exac flag not found in VEP77
VEP variant effect predictor exac
updated 8.1 years ago by 23k • written 8.1 years ago by ▴ 320
0
votes
0
replies
2.4k
views
using gromacs to run molecular dynamic simulation of SNP
gromacs molecular-dynamics SNP md
updated 20 months ago by 43k • written 8.2 years ago by ▴ 320
2
votes
3
replies
3.2k
views
download protein sequences form uniprot that do not contain ambiguous amino acids
uniprot protein
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 320
0
votes
2
replies
2.6k
views
determine reading frame of snp
SNP
updated 2.4 years ago by 43k • written 9.7 years ago by ▴ 320
0
votes
0
replies
3.3k
views
Comment: C: get the snp sequence from dbSNP programally
8.5 years ago by arronslacey ▴ 320
0
votes
1
reply
3.3k
views
Comment: C: get the snp sequence from dbSNP programally
8.5 years ago by arronslacey ▴ 320
20
votes
17
replies
5.3k
views
Is it possible to download a random set of proteins? (fasta files)
protein pdb swissprot uniprot pfam
updated 2.4 years ago by 43k • written 9.8 years ago by ▴ 320
5
votes
2
replies
4.2k
views
get protein sequence from ID
SNP sequence protein gene
updated 23 months ago by 43k • written 9.1 years ago by ▴ 320
1
vote
2
replies
1.9k
views
extract/download graphs from VEP summary page?
SNP VEP ensembl
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 320
0
votes
1
reply
7.1k
views
Comment: C: Algorithms Predicting Effects Of Snps / Aa Substitution On Protein
9.4 years ago by arronslacey ▴ 320
0
votes
0
replies
1.9k
views
output features calculation from various SNP predictor programs
SNP grantham polyphen SIFT
updated 2.1 years ago by 43k • written 9.4 years ago by ▴ 320
1
vote
3
replies
3.1k
views
How Long Does Running Psipred Take ~ 600 Sequences In A Fasta File
fasta
updated 9.4 years ago by • 0 • written 11.0 years ago by ▴ 320
2
votes
0
replies
16k
views
Answer: Answer: Select Certain Column From Vcf File
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 320
0
votes
0
replies
2.2k
views
Comment: Comment: SNP amino acid position from chromStart
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 320
0
votes
0
replies
2.2k
views
Comment: Comment: SNP amino acid position from chromStart
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 320
2
votes
4
replies
2.2k
views
SNP amino acid position from chromStart
SNP ucsc
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 320
0
votes
0
replies
3.1k
views
Comment: Comment: SIFT ncbi executables setup incorrectly?
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 320
8
votes
9
replies
3.1k
views
SIFT ncbi executables setup incorrectly?
blast sift SNP
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 320
2
votes
0
replies
3.1k
views
Comment: Comment: SIFT ncbi executables setup incorrectly?
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 320
0
votes
1
reply
3.1k
views
Comment: Comment: SIFT ncbi executables setup incorrectly?
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 320
0
votes
0
replies
3.1k
views
Comment: C: fasta file not compatible with SIFT?
9.5 years ago by arronslacey ▴ 320
1
vote
0
replies
3.1k
views
Comment: C: fasta file not compatible with SIFT?
9.5 years ago by arronslacey ▴ 320
1
vote
0
replies
2.3k
views
segmentation fault with SIFT standalone
SIFT blast
updated 3.0 years ago by 43k • written 9.5 years ago by ▴ 320
1
vote
1
reply
85k
views
Comment: C: BLAST Database error: No alias or index file found for nucleotide database
9.5 years ago by arronslacey ▴ 320
0
votes
0
replies
1.9k
views
Comment: Comment: Why does dbsnp Gene View show far less snp ids than the entrez query?
updated 2.4 years ago by 43k • written 9.8 years ago by ▴ 320
3
votes
4
replies
1.9k
views
Why does dbsnp Gene View show far less snp ids than the entrez query?
SNP dbsnp
updated 2.4 years ago by 43k • written 9.8 years ago by ▴ 320
0
votes
0
replies
1.9k
views
Comment: Comment: Why does dbsnp Gene View show far less snp ids than the entrez query?
updated 2.4 years ago by 43k • written 9.8 years ago by ▴ 320
3
votes
2
replies
2.2k
views
how can I combine uniprot's random and limit functionality?
uniprot
updated 2.4 years ago by 43k • written 9.8 years ago by ▴ 320
0
votes
0
replies
2.2k
views
Comment: Comment: how can I combine uniprot's random and limit functionality?
updated 2.4 years ago by 43k • written 9.8 years ago by ▴ 320
0
votes
0
replies
5.3k
views
Comment: Comment: Is it possible to download a random set of proteins? (fasta files)
updated 2.4 years ago by 43k • written 9.8 years ago by ▴ 320
1
vote
0
replies
5.3k
views
Comment: Comment: Is it possible to download a random set of proteins? (fasta files)
updated 2.4 years ago by 43k • written 9.8 years ago by ▴ 320
1
vote
0
replies
5.3k
views
Comment: C: Is it possible to download a random set of proteins? (fasta files)
9.8 years ago by arronslacey ▴ 320
79 results • Page 1 of 2
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