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Darked89 ♦ 4.2k
Role: Moderator
Status: New
Handle: @Darked8962
Reputation: 4190
Email: d*********@gmail.com
Joined: 12 months ago
Last seen: 14 months ago
Location: Barcelona, Spain

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1
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5.7k
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C: Rearranging Dna Sequences
10.3 years ago
Darked89 4.2k • updated 13 months ago
RamRS 21k
4
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4
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5.5k
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A: Which Program Should I Test To Map Rnaseq Data? Did Anybody Tried Gsnap?
9.2 years ago
Darked89 4.2k • updated 16 months ago
RamRS 21k
13
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4
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3.4k
Views
Gene Set(S) For Gene Predictor Training
gene next-gen sequencing
10.0 years ago
Darked89 4.2k • updated 22 months ago
RamRS 21k
3
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1
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6.7k
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A: Best Spliced Aligner To Human Genome With Limited Rna-Seq Reads
10.0 years ago
Darked89 4.2k • updated 22 months ago
RamRS 21k
2
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1
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2.9k
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A: How To Build Bambus Scaffolder On Ubuntu 10.04?
10.1 years ago
Darked89 4.2k • updated 22 months ago
RamRS 21k
3
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0
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5.3k
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A: Bwa Sam Output Doubts
10.1 years ago
Darked89 4.2k • updated 22 months ago
RamRS 21k
2
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4
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5.0k
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A: Searching For Mouse Regulatory Motifs
10.1 years ago
Darked89 4.2k • updated 22 months ago
RamRS 21k
3
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1
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5.2k
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A: How Do You Identify And Classify Novel Repetitive Elements In A Denovo Genome?
10.1 years ago
Darked89 4.2k • updated 22 months ago
RamRS 21k
5
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6
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2.8k
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Installing Ensembl Locally
genome database
10.2 years ago
Darked89 4.2k • updated 22 months ago
RamRS 21k
1
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3
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15k
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A: Sam Format Parsing / Stats
10.2 years ago
Darked89 4.2k • updated 22 months ago
RamRS 21k
3
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3
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3.2k
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A: Mining Microsatellites...
10.2 years ago
Darked89 4.2k • updated 22 months ago
RamRS 21k
5
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3
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2.9k
Views
How To Visualize Spliced Alignments Of Next Gen Sequencing Data?
next-gen sequencing visualization splicing
10.2 years ago
Darked89 4.2k • updated 22 months ago
RamRS 21k
8
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9
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3.8k
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Instaling Reas Repeat Finding
repeats next-gen sequencing
10.2 years ago
Darked89 4.2k • updated 22 months ago
RamRS 21k
1
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0
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3.8k
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A: Instaling Reas Repeat Finding
10.0 years ago
Darked89 4.2k • updated 22 months ago
RamRS 21k
0
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0
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9.0k
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C: Extracting A Subset Of Sequences From A Fastq File (Biopython Speed)
10.2 years ago
Darked89 4.2k • updated 22 months ago
RamRS 21k
28
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27
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9.0k
Views
Extracting A Subset Of Sequences From A Fastq File (Biopython Speed)
fastq biopython next-gen sequencing python
10.2 years ago
Darked89 4.2k • updated 22 months ago
RamRS 21k
8
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2
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18k
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A: How To Convert Blast Results To Gff
10.3 years ago
Darked89 4.2k • updated 22 months ago
RamRS 21k
5
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2
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2.7k
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Merging Blastx Hits From Overlapping Bacterial Genome Segments
blast gff annotation genome bacteria
10.3 years ago
Darked89 4.2k • updated 22 months ago
RamRS 21k
28
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13
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10k
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Taxonomy Of Blast Hits
blast taxonomy
10.3 years ago
Darked89 4.2k • updated 22 months ago
RamRS 21k
10
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1
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49k
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A: How To Remove The Same Sequences In The Fasta Files?
9.7 years ago
Darked89 4.2k • updated 22 months ago
RamRS 21k
4
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5
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8.9k
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Exonerate Protein2Genome Options And Output
genome exonerate
9.7 years ago
Darked89 4.2k • updated 3.7 years ago
Michael Dondrup 46k
0
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1
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1.6k
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C: Genotyping by sequencing in Arundo donax
4.7 years ago
Darked89 4.2k
1
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1
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1.6k
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A: Genotyping by sequencing in Arundo donax
4.7 years ago
Darked89 4.2k
1
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0
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1.6k
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C: Genotyping by sequencing in Arundo donax
4.7 years ago
Darked89 4.2k
1
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0
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1.3k
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A: Recommended data warehouse tools for bioinformatics search?
4.7 years ago
Darked89 4.2k
1
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0
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1.8k
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C: Aligning BAC to an assembled sequence
4.7 years ago
Darked89 4.2k
0
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0
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1.3k
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C: compiling clustalx executables
4.7 years ago
Darked89 4.2k
1
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1
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1.3k
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C: compiling clustalx executables
4.7 years ago
Darked89 4.2k
0
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1
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1.8k
Views
C: Aligning BAC to an assembled sequence
4.7 years ago
Darked89 4.2k
1
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1
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1.8k
Views
A: Aligning BAC to an assembled sequence
4.7 years ago
Darked89 4.2k
0
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1
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1.0k
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C: process substitution input
4.8 years ago
Darked89 4.2k
1
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1
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822
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C: a common network between various datasets
4.8 years ago
Darked89 4.2k
0
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0
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1.0k
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A: process substitution input
4.8 years ago
Darked89 4.2k
2
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0
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3.3k
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A: [Beginner] Introduction to bioinformatics file types
4.8 years ago
Darked89 4.2k
3
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0
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5.0k
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A: How Do I Align More Than Five Long Dna Scaffolds (Contigs) To The Reference Gene
4.8 years ago
Darked89 4.2k
1
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1
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1.1k
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C: Identify SNPs of selected genes in VCF file from DGRP
4.8 years ago
Darked89 4.2k
2
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2
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1.8k
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A: Download data from Ensembl database
4.8 years ago
Darked89 4.2k
0
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0
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1.8k
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C: Download data from Ensembl database
4.8 years ago
Darked89 4.2k
6
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1
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5.8k
Views
C: using featureCounts in command line
4.8 years ago
Darked89 4.2k
0
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1
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1.8k
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C: Download data from Ensembl database
4.8 years ago
Darked89 4.2k
0
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0
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1.1k
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A: Methods to identify the secretome from a transcriptome.
4.8 years ago
Darked89 4.2k
0
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0
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2.0k
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C: Just need to learn to do one thing: counting the reads that map to the human mit
4.8 years ago
Darked89 4.2k
0
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0
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2.0k
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C: Just need to learn to do one thing: counting the reads that map to the human mit
4.8 years ago
Darked89 4.2k
1
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1
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1.2k
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C: indicizing genome in tophat2
4.8 years ago
Darked89 4.2k
0
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1
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2.0k
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C: Just need to learn to do one thing: counting the reads that map to the human mit
4.8 years ago
Darked89 4.2k
0
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1
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2.0k
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C: Just need to learn to do one thing: counting the reads that map to the human mit
4.8 years ago
Darked89 4.2k
1
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1
Reply
2.0k
Views
C: Just need to learn to do one thing: counting the reads that map to the human mit
4.8 years ago
Darked89 4.2k
0
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2
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1.6k
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A: Whole exome length of exons from bam file
4.8 years ago
Darked89 4.2k
0
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0
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2.4k
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C: parsing BAM index (quick&dirty samtools view X.bam region)
4.8 years ago
Darked89 4.2k
0
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0
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2.4k
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C: parsing BAM index (quick&dirty samtools view X.bam region)
4.8 years ago
Darked89 4.2k
7
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13
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2.4k
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parsing BAM index (quick&dirty samtools view X.bam region)
BAM samtools picard jython htsjdk
4.8 years ago
Darked89 4.2k
0
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2
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2.4k
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A: parsing BAM index (quick&dirty samtools view X.bam region)
4.8 years ago
Darked89 4.2k
0
Votes
0
Replies
2.4k
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C: parsing BAM index (quick&dirty samtools view X.bam region)
4.8 years ago
Darked89 4.2k
0
Votes
1
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2.4k
Views
C: parsing BAM index (quick&dirty samtools view X.bam region)
4.8 years ago
Darked89 4.2k
0
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0
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1.2k
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C: Detecting abbreviations in publications - text mining
4.8 years ago
Darked89 4.2k
1
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0
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2.4k
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C: parsing BAM index (quick&dirty samtools view X.bam region)
4.8 years ago
Darked89 4.2k
0
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0
Replies
2.4k
Views
C: parsing BAM index (quick&dirty samtools view X.bam region)
4.8 years ago
Darked89 4.2k
0
Votes
0
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12k
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C: How we can analyze sanger sequence chromatogram?
5.6 years ago
Darked89 4.2k
1
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1
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12k
Views
C: How we can analyze sanger sequence chromatogram?
5.6 years ago
Darked89 4.2k
0
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0
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12k
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A: How we can analyze sanger sequence chromatogram?
5.6 years ago
Darked89 4.2k
1
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0
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12k
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A: How we can analyze sanger sequence chromatogram?
5.7 years ago
Darked89 4.2k
2
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0
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5.2k
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A: Getting Cegma/Genewise To Work On Centos, Rhel
5.7 years ago
Darked89 4.2k
0
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0
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1.2k
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C: Paired Rnaseq Reads With Mates In Two Genes
6.3 years ago
Darked89 4.2k
0
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2
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1.2k
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Paired Rnaseq Reads With Mates In Two Genes
rnaseq
6.3 years ago
Darked89 4.2k • updated 6.3 years ago
Nicolas Rosewick 7.7k
30
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6
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6.5k
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K-Mer Based Sequencing Contamination Detection
sequencing
10.3 years ago
Darked89 4.2k • updated 6.6 years ago
Biostar 20
3
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3
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2.4k
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Snps From Genome-2-Genome Alignment
snp maf vcf
7.3 years ago
Darked89 4.2k • updated 7.3 years ago
matted 7.0k
2
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1
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2.0k
Views
Mapping 454 Rnaseq To A Genome
aligner rna-seq
7.4 years ago
Darked89 4.2k • updated 7.3 years ago
Rohit ♦ 1.3k
0
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1
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12k
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C: For Short Reads, Which Aligners Find All Hits Given Certain Edit Distance Thresh
7.4 years ago
Darked89 4.2k
1
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1
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5.7k
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C: Looking For A Recommendation To Perform A De Novo Assembly With Miseq Data Of Le
7.4 years ago
Darked89 4.2k
1
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0
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1.6k
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C: Using Tblastx On Denovo Assembly
7.4 years ago
Darked89 4.2k
3
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0
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2.3k
Views
A: Command Line Program To Trim Abi Files
7.6 years ago
Darked89 4.2k
7
Votes
3
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1.9k
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Splitting Abacas Single Fasta Output
fasta split
8.2 years ago
Darked89 4.2k • updated 8.0 years ago
Lee Katz ♦ 2.9k
3
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1
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12k
Views
A: How Does A Bioinformatics Scientist Document His/Her Work?
8.1 years ago
Darked89 4.2k
0
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0
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1.0k
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C: Why Trace Sequences Could Not Be Found In The Genomes
8.1 years ago
Darked89 4.2k
2
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1
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1.0k
Views
A: Why Trace Sequences Could Not Be Found In The Genomes
8.1 years ago
Darked89 4.2k
0
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0
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1.6k
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A: Detecting Trace Contamiants In Sanger Sequencing
8.2 years ago
Darked89 4.2k
6
Votes
3
Replies
2.5k
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Abyss Speed-Up Tricks
genome assembly
8.4 years ago
Darked89 4.2k • updated 8.3 years ago
Lars Juhl Jensen 11k
0
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0
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1.6k
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A: Ngs With Sanger
8.3 years ago
Darked89 4.2k
2
Votes
0
Replies
5.2k
Views
A: Is There Any Reason To Do De Novo Transcript Assembly If A Reference Is Availabl
8.3 years ago
Darked89 4.2k
0
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0
Replies
2.8k
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C: Hard Masked + Raw Fasta To Soft Masked Fasta
8.3 years ago
Darked89 4.2k
0
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0
Replies
2.8k
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C: Hard Masked + Raw Fasta To Soft Masked Fasta
8.3 years ago
Darked89 4.2k
4
Votes
2
Replies
2.1k
Views
Cufflinks For Rare Transcript Detection
cufflinks transcriptome genome tophat
8.3 years ago
Darked89 4.2k • updated 8.3 years ago
Malachi Griffith 17k
3
Votes
4
Replies
2.8k
Views
Hard Masked + Raw Fasta To Soft Masked Fasta
python code
8.3 years ago
Darked89 4.2k • updated 8.3 years ago
Gustavo • 530
0
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0
Replies
6.6k
Views
A: Aligning Reads From Small Rna-Seq Onto Human Genome
8.3 years ago
Darked89 4.2k
0
Votes
0
Replies
1.9k
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C: Vector Nti Issues When I Try To Save Certain Features
8.4 years ago
Darked89 4.2k
1
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0
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1.4k
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A: S.Pombe Intron Coordinates
8.4 years ago
Darked89 4.2k
2
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1
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2.4k
Views
A: Gene Prediction Tools From Mapped Illumina Rnaseq Data Evidence?
8.4 years ago
Darked89 4.2k
0
Votes
0
Replies
2.4k
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A: Abyss Single End
8.4 years ago
Darked89 4.2k
0
Votes
0
Replies
2.1k
Views
C: Alignment To Selected Region Of The Reference Genome
8.4 years ago
Darked89 4.2k
2
Votes
1
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3.1k
Views
A: Fastq-Dump And Bowtie Mapping
8.4 years ago
Darked89 4.2k
0
Votes
0
Replies
4.1k
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C: C And Fortran Programming Language
8.4 years ago
Darked89 4.2k
0
Votes
0
Replies
3.0k
Views
C: Align Sequentially All Files In A Protein Directory
8.4 years ago
Darked89 4.2k
3
Votes
1
Reply
3.0k
Views
A: Align Sequentially All Files In A Protein Directory
8.4 years ago
Darked89 4.2k
1
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1
Reply
3.3k
Views
A: Merge Velvet Assemblies
8.4 years ago
Darked89 4.2k
5
Votes
2
Replies
1.6k
Views
Distance Tree For Gerp
conservation phylogeny
8.4 years ago
Darked89 4.2k • updated 8.4 years ago
Arelicorlaior • 50
0
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0
Replies
3.0k
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A: Ngs: How Many Reads Should Be Expected To Map To The Reference Sequence
8.4 years ago
Darked89 4.2k
7
Votes
5
Replies
4.3k
Views
Standard Genome Plus Vcf To Variant Genome
genome vcf
8.9 years ago
Darked89 4.2k • updated 8.4 years ago
Swbarnes2 ♦ 1.5k
1
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0
Replies
12k
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A: Trim The Low-Quality End Of 100Bp Read
8.6 years ago
Darked89 4.2k
0
Votes
0
Replies
1.6k
Views
A: Bioscope Vs Bowtie+Tophat
8.7 years ago
Darked89 4.2k
2
Votes
2
Replies
4.0k
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Ncbi Xml To Gff/Gtf
xml gff
8.8 years ago
Darked89 4.2k • updated 8.8 years ago
Daniel Standage 3.9k
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