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362
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Tool: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
parallel next-gen ngs
updated 23 days ago by ▴ 290 • written 11.2 years ago by ★ 4.4k
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Answer: Answer: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
12 months ago by ole.tange ★ 4.4k
2
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1.6k
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Answer: Answer: How do I use GNU parallel with two inputs?
12 months ago by ole.tange ★ 4.4k
1
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1.6k
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Comment: Comment: How do I use GNU parallel with two inputs?
12 months ago by ole.tange ★ 4.4k
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Comment: Comment: Problem adding file names to fasta headers in multiple directories using awk
18 months ago by ole.tange ★ 4.4k
2
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1.0k
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Answer: Answer: Automating pipeline with Parallel, read files in separate folders
22 months ago by ole.tange ★ 4.4k
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Comment: Comment: why do i get this gnu parallel warning (Trimmomatic/Bowtie2)
2.4 years ago by ole.tange ★ 4.4k
1
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1
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2.2k
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Comment: Comment: why do i get this gnu parallel warning (Trimmomatic/Bowtie2)
2.4 years ago by ole.tange ★ 4.4k
1
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Comment: Comment: Help understanding "sed" command in a loop
2.4 years ago by ole.tange ★ 4.4k
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1
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1.1k
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Answer: Answer: Unicycler and GNU parallel
2.6 years ago by ole.tange ★ 4.4k
0
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1
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542
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Determine where an interleaved FASTQ record starts
fastq
updated 2.7 years ago by 21k • written 2.7 years ago by ★ 4.4k
2
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2
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2.4k
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Answer: A: Using GNU parallel to speed up merging VCFs with bcftools
3.2 years ago by ole.tange ★ 4.4k
1
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1
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2.2k
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Comment: C: concatenate all the files with matching prefix in a directory of several files
3.2 years ago by ole.tange ★ 4.4k
1
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0
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2.2k
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Answer: A: concatenate all the files with matching prefix in a directory of several files
3.2 years ago by ole.tange ★ 4.4k
4
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3
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3.0k
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Answer: A: Is it possible to run haplotypecaller in gnu parallel ?
3.2 years ago by ole.tange ★ 4.4k
0
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1
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3.0k
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Comment: C: Is it possible to run haplotypecaller in gnu parallel ?
3.2 years ago by ole.tange ★ 4.4k
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725
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Comment: C: Using Parallel GNU
3.3 years ago by ole.tange ★ 4.4k
1
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143k
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Answer: A: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
3.4 years ago by ole.tange ★ 4.4k
3
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0
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1.3k
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Answer: A: Is there anyway to get a unix parallel command to write to standard output
3.4 years ago by ole.tange ★ 4.4k
3
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0
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8.2k
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Answer: A: GNU parallel command with several multiple arguments
3.7 years ago by ole.tange ★ 4.4k
1
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0
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9.3k
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Comment: C: Bulk download of entire BioProject SRA
3.7 years ago by ole.tange ★ 4.4k
2
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0
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1.3k
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Answer: A: How to set sleep in GNU parallel in a esearch/efetch script
3.7 years ago by ole.tange ★ 4.4k
1
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0
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3.8k
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Answer: A: How do I use bash loop to map with Salmon on files in multiple folders
3.8 years ago by ole.tange ★ 4.4k
3
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0
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143k
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Comment: C: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
updated 4.1 years ago by 43k • written 9.6 years ago by ★ 4.4k
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0
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Comment: C: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
updated 4.1 years ago by 43k • written 8.9 years ago by ★ 4.4k
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0
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143k
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Comment: C: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
updated 4.1 years ago by 43k • written 9.3 years ago by ★ 4.4k
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0
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143k
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Comment: C: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
updated 4.1 years ago by 43k • written 8.8 years ago by ★ 4.4k
0
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1
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5.2k
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Comment: C: How to rename multiple fastq files
4.2 years ago by ole.tange ★ 4.4k
0
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0
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143k
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Comment: C: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
updated 4.3 years ago by 43k • written 9.3 years ago by ★ 4.4k
2
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1
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143k
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Comment: C: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
updated 4.3 years ago by 43k • written 11.2 years ago by ★ 4.4k
0
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0
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143k
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Answer: A: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
4.4 years ago by ole.tange ★ 4.4k
7
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1
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2.0k
views
Answer: A: Calculating Shannon entropy for RNA sequences in multi-fasta using rnaentropy
updated 4.4 years ago by 11k • written 4.4 years ago by ★ 4.4k
2
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0
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Comment: C: Most effective way to merge individual VCF files into VCF files merged by chromo
updated 4.5 years ago by 43k • written 9.9 years ago by ★ 4.4k
1
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0
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6.8k
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Comment: C: Multiple Bam To Multiple Sam
updated 4.5 years ago by 43k • written 11.0 years ago by ★ 4.4k
1
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0
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4.4k
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Answer: A: bwa mem: fail to locate the index files
4.7 years ago by ole.tange ★ 4.4k
3
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1
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3.6k
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Answer: A: using GNU parallel for bwa mem and samtools
4.7 years ago by ole.tange ★ 4.4k
1
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0
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143k
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Comment: C: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
5.0 years ago by ole.tange ★ 4.4k
0
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0
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3.4k
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Comment: C: How to extract filename and change text in the same file
5.1 years ago by ole.tange ★ 4.4k
0
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2
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3.4k
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Comment: C: How to extract filename and change text in the same file
5.1 years ago by ole.tange ★ 4.4k
2
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0
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143k
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Answer: A: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
5.1 years ago by ole.tange ★ 4.4k
0
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0
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143k
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Comment: C: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
5.2 years ago by ole.tange ★ 4.4k
2
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1
reply
9.5k
views
Comment: C: How to speed up trimming using trim galorer
5.3 years ago by ole.tange ★ 4.4k
0
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0
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2.2k
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Comment: C: How to run SNPEff jar for a batch of VCF files using GNU parallel tool?
5.3 years ago by ole.tange ★ 4.4k
13
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0
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2.8k
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Tool: Book: GNU Parallel 2018 - for beginners and advanced users
parallel ngs
updated 10 months ago by 43k • written 5.5 years ago by ★ 4.4k
0
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0
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1.9k
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Comment: C: how to add the sample name to the end read headers
5.6 years ago by ole.tange ★ 4.4k
0
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1
reply
1.6k
views
Answer: A: HOMER parallel annotation for big .bed file
5.8 years ago by ole.tange ★ 4.4k
0
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0
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8.0k
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Comment: C: Trim_galore on multiple fast.qz files: syntax problem
5.8 years ago by ole.tange ★ 4.4k
1
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1
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8.0k
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Answer: A: Trim_galore on multiple fast.qz files: syntax problem
5.8 years ago by ole.tange ★ 4.4k
5
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2
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7.9k
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Answer: A: GNU parallel error: Command line too long
5.8 years ago by ole.tange ★ 4.4k
0
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1
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7.9k
views
Comment: C: GNU parallel error: Command line too long
5.8 years ago by ole.tange ★ 4.4k
112 results • Page 1 of 3
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