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About
Dave Bridges ♦ 1.3k
Status:
New
Handle:
@Dave Bridges58
Reputation:
1270
Joined:
20 months ago
Last seen:
3.9 years ago
Location:
Ann Arbor, MI
Posts
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Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
15
Votes
5
Replies
3.3k
Views
Best Practices For Publication Of mRNA-Seq Data
publication
rna-seq
next-gen
8.4 years ago
Dave Bridges
♦ 1.3k
• updated 3.4 years ago
h.mon
25k
11
Votes
6
Replies
7.6k
Views
6 follow
Transcription Factor Enrichment From Transcriptome
transcription-factor
transcriptome
rna-seq
microarray
8.0 years ago
Dave Bridges
♦ 1.3k
• updated 4.4 years ago
jin
• 80
70
Votes
15
Replies
13k
Views
12 follow
Transcription Factor Enrichment
transcription
transcript
sequence
enrichment
10.4 years ago
Dave Bridges
♦ 1.3k
• updated 4.4 years ago
jin
• 80
0
Votes
1
Reply
6.2k
Views
Comment:
C: Using bootstrap testing in kallisto to obtain estimated transcript counts
5.5 years ago
Dave Bridges
♦ 1.3k
7
Votes
5
Replies
6.0k
Views
Count Junctions In A Sam/Bam File
bam
samtools
rna-seq
8.3 years ago
Dave Bridges
♦ 1.3k
• updated 6.1 years ago
madk00k
• 340
64
Votes
8
Replies
13k
Views
7 follow
How Are Rna-Seq Transcripts Assigned?
rna
cufflinks
isoform
rna-seq
9.1 years ago
Dave Bridges
♦ 1.3k
• updated 6.6 years ago
Malachi Griffith
17k
3
Votes
1
Reply
1.7k
Views
Programmatically Obtain The Go Version From Go.Db
r
go
kegg
7.3 years ago
Dave Bridges
♦ 1.3k
• updated 6.9 years ago
Biostar
20
0
Votes
1
Reply
1.4k
Views
Comment:
C: Multiple Observations In Gwas Via Snps Or Exome Sequencing/Wgs
7.2 years ago
Dave Bridges
♦ 1.3k
1
Vote
3
Replies
1.4k
Views
Multiple Observations In Gwas Via Snps Or Exome Sequencing/Wgs
statistics
gwas
snp
exome-sequencing
7.2 years ago
Dave Bridges
♦ 1.3k
• updated 7.2 years ago
Charles Warden
6.8k
11
Votes
2
Replies
17k
Views
Answer:
A: Retrieve All Genes Associated With A Go Term
7.9 years ago
Dave Bridges
♦ 1.3k
6
Votes
0
Replies
7.4k
Views
Answer:
A: Time Course Rna-Seq Analysis
8.0 years ago
Dave Bridges
♦ 1.3k
1
Vote
0
Replies
7.4k
Views
Comment:
C: Time Course Rna-Seq Analysis
8.0 years ago
Dave Bridges
♦ 1.3k
0
Votes
0
Replies
5.0k
Views
Comment:
C: R: Heatmap Of Rna-Seq Count Table With Functional Gene Clustering
8.2 years ago
Dave Bridges
♦ 1.3k
0
Votes
1
Reply
2.5k
Views
Comment:
C: How To Best Manipulate Deseq Output?
8.3 years ago
Dave Bridges
♦ 1.3k
1
Vote
1
Reply
2.5k
Views
Answer:
A: How To Best Manipulate Deseq Output?
8.3 years ago
Dave Bridges
♦ 1.3k
0
Votes
1
Reply
2.5k
Views
Comment:
C: How To Best Manipulate Deseq Output?
8.3 years ago
Dave Bridges
♦ 1.3k
0
Votes
1
Reply
1.9k
Views
Comment:
C: How Can I Find Transcripts Which Omit Specific Exons Of A Gene?
8.4 years ago
Dave Bridges
♦ 1.3k
0
Votes
0
Replies
2.2k
Views
Comment:
C: Api/Web Service To Fetch Citations Using Pmid
8.4 years ago
Dave Bridges
♦ 1.3k
0
Votes
1
Reply
4.5k
Views
Comment:
C: Are Long Noncoding Rna (Lncrna) Included In The Ucsc Or Ensembl Genome Assemblie
8.4 years ago
Dave Bridges
♦ 1.3k
9
Votes
4
Replies
4.5k
Views
Are Long Noncoding Rna (Lncrna) Included In The Ucsc Or Ensembl Genome Assemblies?
rna-seq
8.4 years ago
Dave Bridges
♦ 1.3k
• updated 8.4 years ago
PoGibas
4.8k
0
Votes
0
Replies
2.8k
Views
Comment:
C: Inferring Gene Regulatory Networks Using Bayesian Inference
8.7 years ago
Dave Bridges
♦ 1.3k
0
Votes
1
Reply
1.1k
Views
Comment:
C: Tools For Building A Protocol Repository?
8.9 years ago
Dave Bridges
♦ 1.3k
1
Vote
0
Replies
2.4k
Views
Comment:
C: Differential Expression Analysis On Rpkms - Contrasts And Contrasts Of Contrasts
9.0 years ago
Dave Bridges
♦ 1.3k
2
Votes
1
Reply
1.5k
Views
Programatically Access The Ncbi Images Database
ncbi
pubmed
biopython
9.0 years ago
Dave Bridges
♦ 1.3k
• updated 9.0 years ago
Rm
7.8k
2
Votes
0
Replies
1.8k
Views
Comment:
C: What Is The Most Appropriate Uri For A Journal Article?
9.2 years ago
Dave Bridges
♦ 1.3k
31
Votes
13
Replies
1.8k
Views
8 follow
What Is The Most Appropriate Uri For A Journal Article?
online
pubmed
9.2 years ago
Dave Bridges
♦ 1.3k
• updated 9.2 years ago
Simon Cockell
7.3k
0
Votes
0
Replies
1.4k
Views
Comment:
C: Are The Pre-Built Reference Sequences From Cbcb Known Transcripts, Or The Entire
9.3 years ago
Dave Bridges
♦ 1.3k
0
Votes
0
Replies
1.4k
Views
Comment:
C: Are The Pre-Built Reference Sequences From Cbcb Known Transcripts, Or The Entire
9.3 years ago
Dave Bridges
♦ 1.3k
1
Vote
3
Replies
1.4k
Views
Are The Pre-Built Reference Sequences From Cbcb Known Transcripts, Or The Entire Genome?
next-gen
sequencing
reference
bowtie
read
short
aligner
9.3 years ago
Dave Bridges
♦ 1.3k
• updated 9.3 years ago
Istvan Albert
87k
2
Votes
0
Replies
3.6k
Views
Comment:
C: Rna-Seq Transcript Length Bias - Is There A 'Standard' Approach To Accounting Fo
9.3 years ago
Dave Bridges
♦ 1.3k
7
Votes
0
Replies
2.8k
Views
Answer:
A: Beginners Guide To Homology Modeling
9.3 years ago
Dave Bridges
♦ 1.3k
0
Votes
0
Replies
8.5k
Views
Comment:
C: Number Of Samples Per Lane For Multiplexed Rna-Seq
9.5 years ago
Dave Bridges
♦ 1.3k
7
Votes
6
Replies
8.5k
Views
Number Of Samples Per Lane For Multiplexed Rna-Seq
rna
next-gen
sequencing
read
barcode
9.5 years ago
Dave Bridges
♦ 1.3k
• updated 9.5 years ago
Travis
♦ 2.8k
8
Votes
2
Replies
1.5k
Views
Rna Sequencing Vs Beadarray/Microarray
rna
transcriptome
microarray
9.6 years ago
Dave Bridges
♦ 1.3k
• updated 9.6 years ago
seidel
6.8k
2
Votes
0
Replies
8.0k
Views
Comment:
C: How To Map Gene Id Or Gene Symbol To Locus
9.6 years ago
Dave Bridges
♦ 1.3k
0
Votes
0
Replies
1.4k
Views
Comment:
C: How Can You Cite Literature When Curating Databases?
9.9 years ago
Dave Bridges
♦ 1.3k
1
Vote
1
Reply
6.4k
Views
Answer:
A: Overrepresented Transcription Factor Binding Sites (Tfbs)
9.9 years ago
Dave Bridges
♦ 1.3k
5
Votes
3
Replies
2.6k
Views
Fan Phylogram Using R
phylogenetics
r
graphs
10.0 years ago
Dave Bridges
♦ 1.3k
4
Votes
4
Replies
1.4k
Views
Design Matrix For Pre-Subtracted Arrays
microarray
bioconductor
limma
10.0 years ago
Dave Bridges
♦ 1.3k
• updated 10.0 years ago
Jan Oosting
• 870
27
Votes
19
Replies
4.3k
Views
7 follow
Database Documentation
database
mysql
10.0 years ago
Dave Bridges
♦ 1.3k
• updated 10.0 years ago
Egon Willighagen
5.2k
0
Votes
0
Replies
3.2k
Views
Comment:
C: What Is A Good Ontology For Experimental Results
10.1 years ago
Dave Bridges
♦ 1.3k
0
Votes
0
Replies
3.2k
Views
Comment:
C: What Is A Good Ontology For Experimental Results
10.2 years ago
Dave Bridges
♦ 1.3k
29
Votes
9
Replies
3.2k
Views
What Is A Good Ontology For Experimental Results
ontology
10.2 years ago
Dave Bridges
♦ 1.3k
• updated 10.2 years ago
Tomasz
• 50
0
Votes
0
Replies
1.8k
Views
Comment:
C: Mapping Of Uniprot Ids To Mips Ids
10.3 years ago
Dave Bridges
♦ 1.3k
2
Votes
0
Replies
2.6k
Views
Answer:
A: Fan Phylogram Using R
10.3 years ago
Dave Bridges
♦ 1.3k
1
Vote
0
Replies
13k
Views
Comment:
C: Transcription Factor Enrichment
10.4 years ago
Dave Bridges
♦ 1.3k
1
Vote
0
Replies
3.9k
Views
Comment:
C: A Resource To Identify Functionally Redundant Genes
11.0 years ago
Dave Bridges
♦ 1.3k
13
Votes
4
Replies
54k
Views
Answer:
A: Tools To Find Gene Ontology Term Enrichment
11.0 years ago
Dave Bridges
♦ 1.3k
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