Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
8
votes
16
replies
5.2k
views
9 follow
visualize CNV data based on WGS
CNV
updated 8 days ago by
clealk
▴ 50 • written 6.2 years ago by
Bogdan
★ 1.4k
1
vote
0
replies
235
views
Forum:
list of bioinformatics tools in cancer genomics
mutations
CNA
cancer
genomics
LOH
updated 5 weeks ago by
Pierre Lindenbaum
160k • written 5 weeks ago by
Bogdan
★ 1.4k
0
votes
0
replies
263
views
filtering SNV/INDEL in tumor-only WGS samples
Tumor-only
samples
4 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
398
views
filtering variants in a Strelka2 VCF file based on AD and AF
Filter
VCF
6 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
323
views
Copy Number Alteration and Loss or Heterozygosity
LOH
CNA
copy-number
updated 9 months ago by
Ram
43k • written 9 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
818
views
Comment:
Comment: fitting a copy number profile to know CNV signatures
11 months ago by
Bogdan
★ 1.4k
2
votes
3
replies
818
views
fitting a copy number profile to know CNV signatures
CNV
copy
number
LOH
CNA
updated 10 months ago by
LauferVA
4.1k • written 11 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
329
views
allelic copy number variation
LOH
CNA
CNV
copy-number
updated 11 months ago by
Ram
43k • written 11 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
343
views
alelle - specific CNA/LOH
cancer
CNV
genomics
LOH
CNA
12 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
293
views
network alignment and network regression
network
13 months ago by
Bogdan
★ 1.4k
1
vote
0
replies
482
views
CNA/LOH caller on WGS data and chromosomal instability index
CNA
CNV
15 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
493
views
downloading the VCF files of CCLE project (or cancer genomics WGS)
cancer
genomics
WGS
CCLE
VCF
15 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
354
views
packages to detect chromoanagenesis phenomena in germline or cancer genomes
ShatterProof
15 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
8.0k
views
Answer:
Answer: How does edgeR do ERCC spike-in normalization?
16 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
275
views
clustering of genome segments
cancer
genomics
epigenetics
16 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
686
views
Comment:
Comment: wig2bed and counting the reads in the peaks
17 months ago by
Bogdan
★ 1.4k
3
votes
2
replies
686
views
wig2bed and counting the reads in the peaks
bedtools
ChIP-seq
deeptools
bedops
updated 9 months ago by
Ram
43k • written 17 months ago by
Bogdan
★ 1.4k
2
votes
1
reply
899
views
normalize and compare bigwig files
bigwig
updated 18 months ago by
Matthias Zepper
4.5k • written 18 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
601
views
calling peaks in ChIP-seq datasets from bedgraph files
ChIP-seq
MACS2
updated 18 months ago by
Marco Pannone
▴ 790 • written 18 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
1.8k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
18 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.8k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
19 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
1.8k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
19 months ago by
Bogdan
★ 1.4k
0
votes
2
replies
1.8k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
19 months ago by
Bogdan
★ 1.4k
0
votes
11
replies
1.8k
views
paired-end reads, idxstats, and samtools and grep
samtools
updated 18 months ago by
LauferVA
4.1k • written 19 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
1.8k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
19 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.8k
views
Comment:
Comment: converting bedgraph to bigwig by not using ucsc tools
19 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
1.8k
views
Comment:
Comment: converting bedgraph to bigwig by not using ucsc tools
19 months ago by
Bogdan
★ 1.4k
5
votes
8
replies
1.8k
views
converting bedgraph to bigwig by not using ucsc tools
bedgraph
bigwig
19 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
1.8k
views
Answer:
Answer: converting bedgraph to bigwig by not using ucsc tools
19 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
957
views
Comment:
Comment: CWL and Arvados
19 months ago by
Bogdan
★ 1.4k
3
votes
3
replies
957
views
CWL and Arvados
CWL
workflow
manager
19 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
607
views
SNV, CNA, SV
SV
CNA
SNV
updated 19 months ago by
LauferVA
4.1k • written 19 months ago by
Bogdan
★ 1.4k
2
votes
1
reply
421
views
extracting sequences from a bam file
bam
updated 19 months ago by
LChart
3.9k • written 19 months ago by
Bogdan
★ 1.4k
1
vote
3
replies
1.0k
views
comparisons between 2 ChIP-seq datasets
ChIP-seq
updated 22 months ago by
ATpoint
81k • written 22 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.0k
views
Comment:
Comment: comparisons between 2 ChIP-seq datasets
22 months ago by
Bogdan
★ 1.4k
4
votes
3
replies
1.4k
views
computing chromothripsis on cancer genomes
snp
cnv
sv
cancer
updated 22 months ago by
Thind amarinder
▴ 340 • written 5.7 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.4k
views
Comment:
Comment: saving png images and X11
22 months ago by
Bogdan
★ 1.4k
0
votes
2
replies
572
views
browser to visualize single cell data
scATAC-seq
updated 22 months ago by
lieven.sterck
15k • written 22 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
320
views
HIC databases
Hi-C
23 months ago by
Bogdan
★ 1.4k
2
votes
1
reply
581
views
scATAC-seq
scATAC-seq
24 months ago by
Bogdan
★ 1.4k
2
votes
0
replies
581
views
Answer:
Answer: scATAC-seq
24 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
395
views
ssvQC
ssvQC
2.1 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.4k
views
Comment:
Comment: saving png images and X11
2.1 years ago by
Bogdan
★ 1.4k
0
votes
5
replies
1.4k
views
saving png images and X11
scripting
saving
images
and
22 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
466
views
HOMER on AWS
HOMER
2.1 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
629
views
compare the background levels in two chip-seq experiments
ChIPseq
updated 2.1 years ago by
seidel
11k • written 2.1 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
581
views
Comment:
Comment: interchromosomal interactions and 4C
2.1 years ago by
Bogdan
★ 1.4k
0
votes
2
replies
581
views
interchromosomal interactions and 4C
4C
2.1 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
801
views
Comment:
Comment: compare ChIP-seq datasets in two cell lines
2.1 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
801
views
Comment:
Comment: compare ChIP-seq datasets in two cell lines
2.1 years ago by
Bogdan
★ 1.4k
386 results • Page
1 of 8
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6