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A. Domingues ♦ 2.1k
Status: New
Handle: @A. Domingues5455
Reputation: 2060
Email: a*********@gmail.com
Joined: 15 months ago
Twitter: keyboardpipette
Last seen: 19 months ago
Location: Mainz, Germany

Biologist doing research in gene expression regulation with a background in neurobiology and entering the world of bioinformatics.

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3
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Comment: C: Middle author, but not first author projects. How would you approach this?
17 months ago
A. Domingues ♦ 2.1k
2
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1
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1.7k
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Comment: C: Middle author, but not first author projects. How would you approach this?
17 months ago
A. Domingues ♦ 2.1k
3
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0
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1.7k
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Comment: C: Middle author, but not first author projects. How would you approach this?
17 months ago
A. Domingues ♦ 2.1k
11
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2
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1.7k
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Answer: A: Middle author, but not first author projects. How would you approach this?
17 months ago
A. Domingues ♦ 2.1k
2
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2.1k
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Comment: C: Who are the Greatest Bioinformaticians Of All Time (GBOAT)
17 months ago
A. Domingues ♦ 2.1k
0
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1
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293
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Answer: A: HTSeq errors in the command line
18 months ago
A. Domingues ♦ 2.1k
2
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3.3k
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Answer: A: fastq file on the basis of read length
19 months ago
A. Domingues ♦ 2.1k
2
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3
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248
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Answer: A: Are small RNAs included in a typical Illumina RNA seq dataset?
19 months ago
A. Domingues ♦ 2.1k
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9.3k
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Comment: C: Test Whether The Variance In A Group Is Lower Than In Another
19 months ago
A. Domingues ♦ 2.1k
10
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6
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5.9k
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MutSigCV output and coMut plots
SNP Variants MutSigCV CoMut plot
6.1 years ago
A. Domingues ♦ 2.1k • updated 19 months ago
jana • 50
3
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6
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1.0k
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Detecting expression in intergenic regions
RNA-Seq Bedtools genome
19 months ago
A. Domingues ♦ 2.1k
0
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241
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How to test gene expression variability - expression differences independent of genotype
RNA-Seq DESeq2 gene expression
20 months ago
A. Domingues ♦ 2.1k
0
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1.1k
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Comment: C: Does read counts for ATAC-seq differential detection make sense?
20 months ago
A. Domingues ♦ 2.1k
1
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571
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Comment: C: smallRNA sequencing workflow and Database usage
20 months ago
A. Domingues ♦ 2.1k
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690
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Comment: C: How to (and where) download Zebrafish Reference Genome (other than Ensembl or US
21 months ago
A. Domingues ♦ 2.1k
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453
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Answer: A: Normalization for small non-coding RNA (piRNAs)
21 months ago
A. Domingues ♦ 2.1k
1
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453
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Answer: A: Normalization for small non-coding RNA (piRNAs)
21 months ago
A. Domingues ♦ 2.1k
0
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2
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451
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Comment: C: Is Kallisto good for identifying non-coding RNA in a RNAseq data?
21 months ago
A. Domingues ♦ 2.1k
1
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453
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Comment: C: Normalization for small non-coding RNA (piRNAs)
21 months ago
A. Domingues ♦ 2.1k
4
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1
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453
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Answer: A: Normalization for small non-coding RNA (piRNAs)
21 months ago
A. Domingues ♦ 2.1k
0
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1
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453
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Comment: C: Normalization for small non-coding RNA (piRNAs)
22 months ago
A. Domingues ♦ 2.1k
2
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1
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618
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Answer: A: help identifying bioinformatics operations tools
22 months ago
A. Domingues ♦ 2.1k
4
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1
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571
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Answer: A: smallRNA sequencing workflow and Database usage
22 months ago
A. Domingues ♦ 2.1k
0
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354
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Comment: C: Strategies for group submisions to SRA (BioProject)
23 months ago
A. Domingues ♦ 2.1k
1
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1
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354
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Comment: C: Strategies for group submisions to SRA (BioProject)
23 months ago
A. Domingues ♦ 2.1k
0
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1
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354
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Comment: C: Strategies for group submisions to SRA (BioProject)
23 months ago
A. Domingues ♦ 2.1k
2
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6
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354
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Forum: Strategies for group submisions to SRA (BioProject)
SRA NCBI Archive next-gen Core Facility Forum
23 months ago
A. Domingues ♦ 2.1k
7
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10
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1.7k
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How to identify consecutive (adjacent) genomic intervals
Latest bed genomic intervals
4.6 years ago
A. Domingues ♦ 2.1k • updated 2.0 years ago
RamRS 21k
0
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Comment: C: How to identify consecutive (adjacent) genomic intervals
4.6 years ago
A. Domingues ♦ 2.1k • updated 2.0 years ago
RamRS 21k
0
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2
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1.7k
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Comment: C: How to identify consecutive (adjacent) genomic intervals
4.6 years ago
A. Domingues ♦ 2.1k • updated 2.0 years ago
RamRS 21k
6
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0
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108k
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Answer: A: How Can I Convert Bam To Sam?
7.9 years ago
A. Domingues ♦ 2.1k • updated 2.0 years ago
RamRS 21k
1
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1.5k
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Comment: C: R code to plot heatmap/average line plots from Deeptools computeMatrix
2.1 years ago
A. Domingues ♦ 2.1k
0
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1
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1.5k
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Comment: C: R code to plot heatmap/average line plots from Deeptools computeMatrix
2.1 years ago
A. Domingues ♦ 2.1k
0
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1
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1.6k
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Answer: A: maSigPro edesign and error message
2.6 years ago
A. Domingues ♦ 2.1k
0
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1.6k
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Comment: C: maSigPro edesign and error message
2.6 years ago
A. Domingues ♦ 2.1k
1
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11k
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Comment: C: Snakemake vs. Nextflow: strengths and weaknesses
2.8 years ago
A. Domingues ♦ 2.1k
1
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1.0k
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Comment: C: Detecting expression in intergenic regions
2.9 years ago
A. Domingues ♦ 2.1k
0
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0
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1.0k
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Comment: C: Detecting expression in intergenic regions
2.9 years ago
A. Domingues ♦ 2.1k
0
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1
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1.0k
Views
Comment: C: Detecting expression in intergenic regions
2.9 years ago
A. Domingues ♦ 2.1k
0
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0
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11k
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Comment: C: Filtering Fasta Sequences By Chromosomes Names From A Big Fasta File
3.2 years ago
A. Domingues ♦ 2.1k
1
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2
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617
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Comment: C: small RNA-seq reads grouping by adjacency
3.4 years ago
A. Domingues ♦ 2.1k
0
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617
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Answer: A: small RNA-seq reads grouping by adjacency
3.4 years ago
A. Domingues ♦ 2.1k
0
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5.3k
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Comment: C: Venn diagrams for multiple (8) data lists in R
3.4 years ago
A. Domingues ♦ 2.1k
3
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2.1k
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Answer: A: how to select longest isoform per gene in gtf
3.4 years ago
A. Domingues ♦ 2.1k
0
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0
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1.9k
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Comment: C: Graph visualization with igraph in R
3.4 years ago
A. Domingues ♦ 2.1k
0
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1
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1.2k
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Comment: C: PART FUNDED SCHOLARSHIPS - Coding, data management, and Shiny applications using
3.5 years ago
A. Domingues ♦ 2.1k
1
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13k
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Comment: C: Bioinformatics courses, workshops or training
3.5 years ago
A. Domingues ♦ 2.1k
1
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1
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1.5k
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Comment: C: How to do differential expression of circular RNAs?
3.5 years ago
A. Domingues ♦ 2.1k
0
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1.5k
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Comment: C: How to do differential expression of circular RNAs?
3.5 years ago
A. Domingues ♦ 2.1k
2
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1.5k
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Comment: C: How to do differential expression of circular RNAs?
3.5 years ago
A. Domingues ♦ 2.1k
7
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1
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1.9k
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Answer: A: from txt to bed
3.5 years ago
A. Domingues ♦ 2.1k
0
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0
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593
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Comment: C: How to find Overlapping coordinates on their 3' or 5'?
3.5 years ago
A. Domingues ♦ 2.1k
0
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1
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593
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Comment: C: How to find Overlapping coordinates on their 3' or 5'?
3.5 years ago
A. Domingues ♦ 2.1k
1
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1
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1.9k
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Comment: C: from txt to bed
3.5 years ago
A. Domingues ♦ 2.1k
1
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4
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593
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How to find Overlapping coordinates on their 3' or 5'?
bed bedtools intersection genomic coordinates
3.5 years ago
A. Domingues ♦ 2.1k • updated 3.5 years ago
Pierre Lindenbaum 120k
1
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1.9k
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Comment: C: from txt to bed
3.5 years ago
A. Domingues ♦ 2.1k
0
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0
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1.9k
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Comment: C: from txt to bed
3.5 years ago
A. Domingues ♦ 2.1k
0
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0
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1.6k
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Comment: C: bedtools shuffle vs. random
3.5 years ago
A. Domingues ♦ 2.1k
3
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967
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Comment: C: what I want to do after the PhD?
3.5 years ago
A. Domingues ♦ 2.1k
0
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1
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1.6k
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Comment: C: bedtools shuffle vs. random
3.5 years ago
A. Domingues ♦ 2.1k
2
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1
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1.6k
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Answer: A: bedtools shuffle vs. random
3.5 years ago
A. Domingues ♦ 2.1k
0
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1
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536
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Comment: C: Question about rRNA in data
3.5 years ago
A. Domingues ♦ 2.1k
3
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1
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1.7k
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Answer: A: piRNA target-interaction database?
3.6 years ago
A. Domingues ♦ 2.1k
2
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1
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1.6k
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Answer: A: Publicly available RNA-seq data of neurons from human
3.7 years ago
A. Domingues ♦ 2.1k
0
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0
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2.0k
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Answer: A: small RNA analysis pipeline!
3.8 years ago
A. Domingues ♦ 2.1k
0
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1
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1.2k
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Comment: C: [survey] Have your say on Bioinformatics and NGS training
3.8 years ago
A. Domingues ♦ 2.1k
1
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1.2k
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Comment: C: [survey] Have your say on Bioinformatics and NGS training
3.8 years ago
A. Domingues ♦ 2.1k
0
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0
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5.5k
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Comment: C: gff3 to CDS fasta
3.9 years ago
A. Domingues ♦ 2.1k
2
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1
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5.5k
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Answer: A: gff3 to CDS fasta
3.9 years ago
A. Domingues ♦ 2.1k
2
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0
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42k
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Comment: C: What Tools/Libraries Do You Use To Visualize Genomic Feature Data?
3.9 years ago
A. Domingues ♦ 2.1k
0
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0
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974
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Comment: C: Retrieve tissue expression in Zfin (R/python)
4.1 years ago
A. Domingues ♦ 2.1k
2
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3
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974
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Retrieve tissue expression in Zfin (R/python)
Latest Zfin zebrafish Danio rerio
4.6 years ago
A. Domingues ♦ 2.1k • updated 4.1 years ago
julien.roux • 90
2
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2
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1.6k
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rRNA quantification: which is the best way?
rRNA mapping featureCounts
4.2 years ago
A. Domingues ♦ 2.1k • updated 4.2 years ago
Charles Plessy ♦ 2.7k
2
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0
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2.1k
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Answer: A: How to improve the pipeline of call snp in RNA-seq?
4.2 years ago
A. Domingues ♦ 2.1k
4
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2
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4.3k
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Answer: A: How To Install BioPerl Without Root Privileges in Ubuntu/Linxu
4.2 years ago
A. Domingues ♦ 2.1k
1
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0
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4.3k
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Comment: C: How To Install BioPerl Without Root Privileges in Ubuntu/Linxu
4.2 years ago
A. Domingues ♦ 2.1k
0
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0
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3.9k
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Comment: C: edgeR normalization method
4.3 years ago
A. Domingues ♦ 2.1k
0
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0
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800
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Answer: A: Generate bed co-ordinates other then given input bed file
4.3 years ago
A. Domingues ♦ 2.1k
0
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0
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1.3k
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Comment: C: How do I filter a bam on length with pybedtools?
4.3 years ago
A. Domingues ♦ 2.1k
0
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0
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1.3k
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Comment: C: How do I filter a bam on length with pybedtools?
4.3 years ago
A. Domingues ♦ 2.1k
3
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2
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1.3k
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Answer: A: How do I filter a bam on length with pybedtools?
4.3 years ago
A. Domingues ♦ 2.1k
0
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2
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2.8k
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Comment: C: miRDeep2.0.0.8 install error occured
4.3 years ago
A. Domingues ♦ 2.1k
1
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1
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2.8k
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Answer: A: miRDeep2.0.0.8 install error occured
4.3 years ago
A. Domingues ♦ 2.1k
6
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0
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5.9k
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Answer: A: MutSigCV output and coMut plots
4.3 years ago
A. Domingues ♦ 2.1k
1
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0
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1.2k
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Answer: A: retrotransposon RNAseq quantification and ChIPseq peak calling tools/guides?
4.4 years ago
A. Domingues ♦ 2.1k
0
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0
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1.1k
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Answer: A: What does "integrative call set" mean to you?
4.4 years ago
A. Domingues ♦ 2.1k
1
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0
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1.2k
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Comment: C: Fasta output from bedtools GetFastaBed
4.5 years ago
A. Domingues ♦ 2.1k
1
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1
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2.2k
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Comment: C: Big news from Microsoft. BASH on windows.
4.5 years ago
A. Domingues ♦ 2.1k
0
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0
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18k
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Comment: C: Which Bioinformatic Friendly Pipeline Building Framework?
4.5 years ago
A. Domingues ♦ 2.1k
2
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0
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1.2k
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Comment: C: How to get help on a question that has been buried?
4.5 years ago
A. Domingues ♦ 2.1k
0
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0
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23k
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Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 03/10/16)
4.5 years ago
A. Domingues ♦ 2.1k
0
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1
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23k
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Comment: C: Visualization of ChIP-seq data using Heatmaps
4.5 years ago
A. Domingues ♦ 2.1k
1
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1
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23k
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Answer: A: Visualization of ChIP-seq data using Heatmaps
4.5 years ago
A. Domingues ♦ 2.1k
1
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0
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1.8k
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Comment: C: Mapping to the transcriptome using Bowtie - am I doing it right?
4.5 years ago
A. Domingues ♦ 2.1k
6
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3
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1.8k
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Mapping to the transcriptome using Bowtie - am I doing it right?
bowtie gtf transcriptome zebrafish RNA-Seq
4.5 years ago
A. Domingues ♦ 2.1k • updated 4.5 years ago
mastal511 ♦ 2.0k
0
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0
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1.2k
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Comment: C: DiffBind Normalization by bFullLibrarySize
4.5 years ago
A. Domingues ♦ 2.1k
0
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1
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1.6k
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Comment: C: mirDeep2 input files- where to download?
4.5 years ago
A. Domingues ♦ 2.1k
0
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1
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1.3k
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Comment: C: Error with bedtools intersect
4.5 years ago
A. Domingues ♦ 2.1k
0
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0
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1.3k
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Comment: C: Error with bedtools intersect
4.5 years ago
A. Domingues ♦ 2.1k
0
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1
Reply
23k
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Comment: C: Visualization of ChIP-seq data using Heatmaps
4.5 years ago
A. Domingues ♦ 2.1k
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