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Mate mismatch errors in 1000genomes CRAM files
1000genomes Matepairs CRAM ValidateSAM FixMate
5.2 years ago by Mehulsharma.253 ▴ 30
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2.6k
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Comment: C: Convert specific regions in bam file to vcf and annotating the vcf
5.3 years ago by Mehulsharma.253 ▴ 30
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1
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2.3k
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Comment: C: How to choose good tools for identifying functional SNPs?
5.3 years ago by Mehulsharma.253 ▴ 30
2
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1
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2.5k
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CRAM reference registry and the GRch38 reference genome
BAM Samtools GRCh38 CRAM Variant-Calling
updated 20 days ago by 43k • written 5.3 years ago by ▴ 30
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1
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1.4k
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Dealing with a large sample for variant calling
NGS alignment variant-calling joint-calling
updated 20 days ago by 43k • written 5.3 years ago by ▴ 30
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3.5k
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Comment: C: Bash vs WDL for running GATK
5.3 years ago by Mehulsharma.253 ▴ 30
4
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3
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1.3k
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GATK best practices for Broad-produced NGS data
NGS GATK4 BroadInstitute Variant-Calling
updated 20 days ago by 43k • written 5.4 years ago by ▴ 30
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0
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1.1k
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Effect of dbSNP build differences in variant calling
GRCh38 dbSNP variant-calling GATK assembly
updated 20 days ago by 43k • written 5.4 years ago by ▴ 30
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0
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1.3k
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Comment: C: GATK best practices for Broad-produced NGS data
5.4 years ago by Mehulsharma.253 ▴ 30
6
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4
replies
3.5k
views
Bash vs WDL for running GATK
GATK Linux Pipeline WDL Cromwell
updated 5.4 years ago by ★ 1.2k • written 5.4 years ago by ▴ 30
1
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1
reply
4.2k
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Warning in GATK Picard MarkDuplicates
GATK Picard MarkDuplicates Variant Calling
updated 5.4 years ago by 161k • written 5.4 years ago by ▴ 30
1
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0
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28k
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Answer: A: Out Of Disk Space With Picard Tools ?
5.4 years ago by Mehulsharma.253 ▴ 30
1
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0
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3.7k
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Answer: A: Setting temporary directory for GATK4 SortSam
5.4 years ago by Mehulsharma.253 ▴ 30
0
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0
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5.3k
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Answer: A: Temporary Directory Problem in GATK4
5.4 years ago by Mehulsharma.253 ▴ 30
3
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2
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3.7k
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Setting temporary directory for GATK4 SortSam
Linux software error GATK4 picard tmpdir
5.4 years ago by Mehulsharma.253 ▴ 30
0
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1
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5.8k
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Comment: C: Inclusion of ALT contigs and decoys in bwa alignment
5.4 years ago by Mehulsharma.253 ▴ 30
0
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1
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5.8k
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Comment: C: Inclusion of ALT contigs and decoys in bwa alignment
updated 5.4 years ago by 81k • written 5.4 years ago by ▴ 30
0
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2
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28k
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Comment: C: Out Of Disk Space With Picard Tools ?
5.4 years ago by Mehulsharma.253 ▴ 30
0
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0
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2.9k
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Comment: C: Can someone explain what the -M option in BWA-MEM does?
5.4 years ago by Mehulsharma.253 ▴ 30
10
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6
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5.8k
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Inclusion of ALT contigs and decoys in bwa alignment
bwa NGS alignment hg38 bwa.kit
5.4 years ago by Mehulsharma.253 ▴ 30
0
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1
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1.4k
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Comment: C: Tabix ouputs a non-specified region VCF
5.4 years ago by Mehulsharma.253 ▴ 30
2
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5
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1.4k
views
Tabix ouputs a non-specified region VCF
SNP next-gen
5.4 years ago by Mehulsharma.253 ▴ 30
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