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6
votes
3
replies
3.1k
views
split vcf by individual
vcftools vcf-subset SNP vcf
written 5.4 years ago by ▴ 170
2
votes
3
replies
2.7k
views
selscan not outputting ihs
selscan haplotypes vcf
updated 2.6 years ago by ▴ 10 • written 5.0 years ago by ▴ 170
0
votes
1
reply
1.4k
views
Comment: C: Perform PCA for mtDNA MSA Data
3.2 years ago by biosol ▴ 170
0
votes
0
replies
1.6k
views
Comment: C: merging .vcf files for mitochondrial SNPs
3.2 years ago by biosol ▴ 170
0
votes
1
reply
4.3k
views
Comment: C: Calculating Tajima's D from vcf data using bed files
3.2 years ago by biosol ▴ 170
1
vote
0
replies
1.4k
views
Comment: C: update genotype calls with PyVCF
3.4 years ago by biosol ▴ 170
2
votes
2
replies
1.4k
views
update genotype calls with PyVCF
pyvcf genotypes
updated 3.4 years ago by 161k • written 3.4 years ago by ▴ 170
0
votes
0
replies
874
views
Manhattan plot with Bayes factor
R CMplot qqman
updated 3.5 years ago by 20 • written 4.8 years ago by ▴ 170
0
votes
0
replies
658
views
1000Genomes exome vcf
1000genomes vcf exome
3.9 years ago by biosol ▴ 170
1
vote
1
reply
2.7k
views
Comment: C: PGDSPider VCF to BAYENV
4.0 years ago by biosol ▴ 170
3
votes
3
replies
2.7k
views
PGDSPider VCF to BAYENV
PGDSpider VCF Bayenv2
updated 4.0 years ago by ▴ 50 • written 5.3 years ago by ▴ 170
1
vote
0
replies
693
views
qvalue for PBS
qvalue PBS R
4.0 years ago by biosol ▴ 170
0
votes
1
reply
791
views
Comment: C: align specific region of human to panTro6
4.1 years ago by biosol ▴ 170
0
votes
0
replies
791
views
Comment: C: align specific region of human to panTro6
4.1 years ago by biosol ▴ 170
0
votes
1
reply
791
views
Comment: C: align specific region of human to panTro6
4.1 years ago by biosol ▴ 170
1
vote
6
replies
791
views
align specific region of human to panTro6
alignment panTro6
updated 4.1 years ago by 13k • written 4.1 years ago by ▴ 170
0
votes
0
replies
1.0k
views
Comment: C: twoBitToFa retrieving longer sequence than expected in hg19
4.1 years ago by biosol ▴ 170
2
votes
3
replies
1.0k
views
twoBitToFa retrieving longer sequence than expected in hg19
twoBitToFa hg19
updated 4.1 years ago by ▴ 550 • written 4.1 years ago by ▴ 170
0
votes
0
replies
3.8k
views
Comment: C: Converting ms or msms output to PLINK or VCF files
4.1 years ago by biosol ▴ 170
12
votes
8
replies
4.9k
views
1000Genomes population allele frequencies for list of SNPs
snps 1000Genomes
updated 4.2 years ago by 20 • written 5.4 years ago by ▴ 170
4
votes
8
replies
1.7k
views
gene ontology with reference list
RNA-Seq gene ontology
updated 4.5 years ago by ▴ 20 • written 4.5 years ago by ▴ 170
0
votes
0
replies
1.7k
views
Comment: C: gene ontology with reference list
4.5 years ago by biosol ▴ 170
0
votes
1
reply
1.7k
views
Comment: C: gene ontology with reference list
4.5 years ago by biosol ▴ 170
0
votes
1
reply
1.0k
views
mitochondrial DNA in vcf for haplogrep2
haplogrep2 mtDNA vcf
4.6 years ago by biosol ▴ 170
0
votes
0
replies
1.5k
views
Comment: C: extract genes and functions +/-50kb around a SNP
4.9 years ago by biosol ▴ 170
0
votes
1
reply
1.5k
views
Comment: C: extract genes and functions +/-50kb around a SNP
4.9 years ago by biosol ▴ 170
0
votes
1
reply
1.5k
views
Comment: C: extract genes and functions +/-50kb around a SNP
4.9 years ago by biosol ▴ 170
5
votes
10
replies
1.5k
views
extract genes and functions +/-50kb around a SNP
SNP gwas
4.9 years ago by biosol ▴ 170
0
votes
0
replies
1.6k
views
Comment: C: bayenv2: "initial epsilon zero or 1 locus 6912"
4.9 years ago by biosol ▴ 170
1
vote
3
replies
1.6k
views
bayenv2: "initial epsilon zero or 1 locus 6912"
bayenv2 snps
updated 2.5 years ago by ▴ 140 • written 4.9 years ago by ▴ 170
0
votes
1
reply
2.4k
views
Comment: C: heatmap with plink genome file
4.9 years ago by biosol ▴ 170
5
votes
3
replies
2.4k
views
heatmap with plink genome file
R plink IBD
updated 4.9 years ago by 11k • written 4.9 years ago by ▴ 170
3
votes
2
replies
4.1k
views
LD filter for GWAS with plink
plink gwas linkage disequilibrium
5.1 years ago by biosol ▴ 170
1
vote
0
replies
7.7k
views
Comment: C: Beagle imputation results quality control
5.1 years ago by biosol ▴ 170
0
votes
0
replies
1.8k
views
Comment: C: update genotypes in vcf
5.2 years ago by biosol ▴ 170
0
votes
1
reply
1.8k
views
Comment: C: update genotypes in vcf
5.2 years ago by biosol ▴ 170
2
votes
5
replies
1.8k
views
update genotypes in vcf
vcf genotypes
5.2 years ago by biosol ▴ 170
0
votes
0
replies
1.7k
views
Comment: C: Change ALT field in VCF
5.2 years ago by biosol ▴ 170
0
votes
2
replies
1.7k
views
Change ALT field in VCF
vcf snps gwas
5.2 years ago by biosol ▴ 170
0
votes
0
replies
2.1k
views
Comment: C: vcf-merge outputting all genotypes as ./.
5.2 years ago by biosol ▴ 170
0
votes
1
reply
2.1k
views
Comment: C: vcf-merge outputting all genotypes as ./.
5.2 years ago by biosol ▴ 170
0
votes
1
reply
2.1k
views
Comment: C: vcf-merge outputting all genotypes as ./.
5.2 years ago by biosol ▴ 170
0
votes
1
reply
2.1k
views
Comment: C: vcf-merge outputting all genotypes as ./.
5.2 years ago by biosol ▴ 170
0
votes
1
reply
2.1k
views
Comment: C: vcf-merge outputting all genotypes as ./.
5.2 years ago by biosol ▴ 170
0
votes
9
replies
2.1k
views
vcf-merge outputting all genotypes as ./.
vcf-merge vcf
5.2 years ago by biosol ▴ 170
0
votes
0
replies
1.9k
views
spid file in PGDSpider-cli
PGDSpider spid
5.3 years ago by biosol ▴ 170
0
votes
0
replies
7.7k
views
Comment: C: Beagle imputation results quality control
5.3 years ago by biosol ▴ 170
0
votes
1
reply
4.9k
views
Comment: C: 1000Genomes population allele frequencies for list of SNPs
5.4 years ago by biosol ▴ 170
1
vote
1
reply
2.5k
views
mean Tajima's D value
Tajima's D SNP
updated 5.4 years ago by ▴ 180 • written 5.4 years ago by ▴ 170
3
votes
5
replies
7.3k
views
vcftools --TajimaD in sliding windows
vcftools SNP Tajima's D
5.4 years ago by biosol ▴ 170
53 results • Page 1 of 2
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