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0
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330
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Comment: Comment: Help related to HTSEq usage specific for downstream DEXSeq analysis
3 months ago by Barry Digby ★ 1.3k
1
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0
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442
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Answer: Answer: Salmon quant with netflow nf-core/rnaseq -r 3.13.2
3 months ago by Barry Digby ★ 1.3k
0
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0
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515
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Comment: Comment: Opinion on miRNA pipeline
4 months ago by Barry Digby ★ 1.3k
0
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1
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515
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Comment: Comment: Opinion on miRNA pipeline
4 months ago by Barry Digby ★ 1.3k
0
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0
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364
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Comment: Comment: error uploading gct file to gsea
5 months ago by Barry Digby ★ 1.3k
1
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0
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354
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Answer: Answer: How to implement neoantigen sequences using WES data?
6 months ago by Barry Digby ★ 1.3k
3
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1
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788
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Answer: Answer: Unable to save plots in R using jpeg() or png()
6 months ago by Barry Digby ★ 1.3k
0
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0
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581
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Comment: Comment: I cannot obtain summary alignment with Bowtie2
6 months ago by Barry Digby ★ 1.3k
0
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1
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581
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Answer: Answer: I cannot obtain summary alignment with Bowtie2
6 months ago by Barry Digby ★ 1.3k
0
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0
replies
653
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Comment: Comment: Normal vs Tumor - Kaplan Meier Survival Analysis
updated 6 months ago by 43k • written 6 months ago by ★ 1.3k
1
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1
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830
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Answer: Answer: identify DEGs across all conditions and per specific conditions
6 months ago by Barry Digby ★ 1.3k
0
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1
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701
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Comment: Comment: obtaining circular RNAs' sequences from circBase
7 months ago by Barry Digby ★ 1.3k
1
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1
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701
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Answer: Answer: obtaining circular RNAs' sequences from circBase
7 months ago by Barry Digby ★ 1.3k
3
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0
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644
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Answer: Answer: Identifying common DEGs among multiple datasets
7 months ago by Barry Digby ★ 1.3k
2
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0
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2.9k
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Answer: Answer: Running python script in slurm using conda environment
7 months ago by Barry Digby ★ 1.3k
3
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0
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1.1k
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Answer: Answer: How to remove the gene label in heatmap RNA-seq
7 months ago by Barry Digby ★ 1.3k
0
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1
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965
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Comment: Comment: No differentially expressed genes after multiple testing correction in mice
11 months ago by Barry Digby ★ 1.3k
0
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1
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612
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Comment: Comment: Seeking Alternative Tools for Predicting Mature microRNAs from Vertebrate Animal
12 months ago by Barry Digby ★ 1.3k
0
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0
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1.4k
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Answer: Answer: How to run prepDE.py3?
12 months ago by Barry Digby ★ 1.3k
0
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0
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1.6k
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Answer: Answer: Unusual FastQC sequence distribution from small RNA seq
15 months ago by Barry Digby ★ 1.3k
2
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1
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778
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Answer: Answer: How do I extract gene names from different portions of my heatmap?
20 months ago by Barry Digby ★ 1.3k
1
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1
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661
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Comment: Comment: circular RNA analysis workflow
20 months ago by Barry Digby ★ 1.3k
0
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5
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2.2k
views
Missing gene symbols in bustools output
bustools scanpy kallisto single-cell scRNA
updated 21 months ago by • 0 • written 4.3 years ago by ★ 1.3k
1
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1
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3.2k
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Comment: Comment: error while testing nextflow with --genome GRCh38
21 months ago by Barry Digby ★ 1.3k
1
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0
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660
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Answer: Answer: CIRIexplorer2 annotate
22 months ago by Barry Digby ★ 1.3k
0
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1
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7.0k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
24 months ago by Barry Digby ★ 1.3k
0
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0
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7.0k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
24 months ago by Barry Digby ★ 1.3k
0
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1
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7.0k
views
Comment: Comment: TCGA transcriptome data to R (DESeq2)
2.1 years ago by Barry Digby ★ 1.3k
16
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9
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7.0k
views
Tutorial: TCGA transcriptome data to R (DESeq2)
TCGA GDC DESeq2
updated 22 months ago by ▴ 70 • written 2.4 years ago by ★ 1.3k
2
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0
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1.1k
views
Comment: Comment: how does annotate circular RNA ?
2.4 years ago by Barry Digby ★ 1.3k
1
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1
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1.1k
views
Answer: Answer: how does annotate circular RNA ?
2.4 years ago by Barry Digby ★ 1.3k
3
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0
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3.6k
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Answer: Answer: need some help on how to use DESeq2 for TCGA data
2.4 years ago by Barry Digby ★ 1.3k
3
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1
reply
953
views
Answer: Answer: GEOquery: unable to fetch raw CEL files
2.6 years ago by Barry Digby ★ 1.3k
0
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0
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3.1k
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Answer: Answer: BUSCO installation and run
2.7 years ago by Barry Digby ★ 1.3k
1
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0
replies
3.2k
views
Comment: Comment: Add NES value to GSEA plot
2.8 years ago by Barry Digby ★ 1.3k
1
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1
reply
2.2k
views
Comment: Comment: TCGA library type information
2.9 years ago by Barry Digby ★ 1.3k
0
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1
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2.2k
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Comment: Comment: TCGA library type information
2.9 years ago by Barry Digby ★ 1.3k
3
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0
replies
1.6k
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Comment: C: Getting standard 12-column format for a list of genes
3.1 years ago by Barry Digby ★ 1.3k
0
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0
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795
views
Comment: C: how to annotate Circular RNA gene type?
3.1 years ago by Barry Digby ★ 1.3k
1
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1
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795
views
Comment: C: how to annotate Circular RNA gene type?
3.1 years ago by Barry Digby ★ 1.3k
0
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1
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2.8k
views
Comment: C: nextflow set tuple issue
3.1 years ago by Barry Digby ★ 1.3k
4
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1
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2.8k
views
Answer: A: nextflow set tuple issue
3.1 years ago by Barry Digby ★ 1.3k
1
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0
replies
9.5k
views
Comment: C: How to plot GSEA result?
3.2 years ago by Barry Digby ★ 1.3k
0
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1
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2.8k
views
Comment: C: Which adapters to use for trimming?
3.3 years ago by Barry Digby ★ 1.3k
0
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1
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2.8k
views
Comment: C: Which adapters to use for trimming?
3.3 years ago by Barry Digby ★ 1.3k
2
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1
reply
1.6k
views
Answer: A: How to remove X & Y chromosome genes from RNAseq data
3.3 years ago by Barry Digby ★ 1.3k
0
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1
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1.6k
views
Comment: C: How to remove X & Y chromosome genes from RNAseq data
3.3 years ago by Barry Digby ★ 1.3k
1
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0
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9.5k
views
Comment: C: How to plot GSEA result?
3.3 years ago by Barry Digby ★ 1.3k
0
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0
replies
1.9k
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Comment: C: TCGA gene and mirna expression value
3.3 years ago by Barry Digby ★ 1.3k
0
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0
replies
1.6k
views
Comment: C: Why is mapper.pl from mirdeep2 producing an empty mapping file?
3.4 years ago by Barry Digby ★ 1.3k
144 results • Page 1 of 3
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