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Comment: C: Hot to retrieval a SNP from a very big vcf file by position with tabix
4.8 years ago by vw ▴ 40
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2.7k
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Comment: C: Hot to retrieval a SNP from a very big vcf file by position with tabix
4.8 years ago by vw ▴ 40
2
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4
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2.7k
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Hot to retrieval a SNP from a very big vcf file by position with tabix
tabix vcftools vcf SNP
4.8 years ago by vw ▴ 40
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0
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2.9k
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Comment: C: Does is make sense if I select a subset from the count matrix to do DE analysis?
4.8 years ago by vw ▴ 40
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1
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2.9k
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Comment: C: Does is make sense if I select a subset from the count matrix to do DE analysis?
4.8 years ago by vw ▴ 40
0
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1
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2.9k
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Comment: C: Does is make sense if I select a subset from the count matrix to do DE analysis?
4.8 years ago by vw ▴ 40
6
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7
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2.9k
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Does is make sense if I select a subset from the count matrix to do DE analysis?
DESeq2 Limma RNA-Seq
updated 4.8 years ago by 5.3k • written 4.8 years ago by ▴ 40
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4.0k
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Comment: C: RNAseq: how to make design matrix for limma
4.8 years ago by vw ▴ 40
4
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2
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4.0k
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RNAseq: how to make design matrix for limma
Limma RNA-Seq DESeq2
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by ▴ 40
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13k
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Comment: C: ATAC-seq DE analysis
4.8 years ago by vw ▴ 40
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1
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13k
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Comment: C: ATAC-seq DE analysis
4.8 years ago by vw ▴ 40
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0
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1.4k
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Comment: C: What is the "-" option of samtools?
4.8 years ago by vw ▴ 40
2
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2
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1.4k
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What is the "-" option of samtools?
samtools
updated 4.8 years ago by 161k • written 4.8 years ago by ▴ 40
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0
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1.1k
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Comment: C: Can F-seq appers the p-value for each peak in the output?
5.1 years ago by vw ▴ 40
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1
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1.1k
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Comment: C: Can F-seq appers the p-value for each peak in the output?
5.1 years ago by vw ▴ 40
0
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4
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1.1k
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Can F-seq appers the p-value for each peak in the output?
ChIP-Seq ATAC-Seq
5.1 years ago by vw ▴ 40
1
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0
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2.7k
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Answer: A: F-seq output: Meaning of bed columns
5.1 years ago by vw ▴ 40
0
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0
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1.6k
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What's the meaning of column "score" of output bed file from F-seq
ChIP-Seq ATAC-Seq PeakCalling
5.1 years ago by vw ▴ 40
1
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1
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8.2k
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Comment: C: How to count the total aligned bases in BAM?
5.9 years ago by vw ▴ 40
9
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13
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8.2k
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6 follow
How to count the total aligned bases in BAM?
bam pysam pybedtools python
5.9 years ago by vw ▴ 40
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0
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8.2k
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Comment: C: How to count the total aligned bases in BAM?
5.9 years ago by vw ▴ 40
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2
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8.2k
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Comment: C: How to count the total aligned bases in BAM?
5.9 years ago by vw ▴ 40
0
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0
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8.2k
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Comment: C: How to count the total aligned bases in BAM?
5.9 years ago by vw ▴ 40
0
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1
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2.4k
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Comment: C: How to compute target aligned reads/total aligned reads (read enrichment) with P
5.9 years ago by vw ▴ 40
0
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4
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2.4k
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How to compute target aligned reads/total aligned reads (read enrichment) with Python?
pybedtools pysam bam bed
5.9 years ago by vw ▴ 40
0
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1
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2.4k
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Comment: C: How to compute target aligned reads/total aligned reads (read enrichment) with P
5.9 years ago by vw ▴ 40
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