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8
votes
4
replies
1.6k
views
Plot genes along scaffolds and sort scaffolds according to their length
R plot genes scaffold
updated 3 months ago by ▴ 90 • written 3.7 years ago by ▴ 130
2
votes
1
reply
396
views
How do you add an ORF that overlaps the two regions where a circular genome is cut in Genbank?
genbank
11 months ago by Chvatil ▴ 130
2
votes
0
replies
396
views
Answer: Answer: How do you add an ORF that overlaps the two regions where a circular genome is c
11 months ago by Chvatil ▴ 130
2
votes
1
reply
667
views
Looking for Synteny blocks database in arthopods
database synteny
updated 2.4 years ago by ★ 3.8k • written 2.4 years ago by ▴ 130
0
votes
0
replies
2.0k
views
Comment: Comment: Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
2.7 years ago by Chvatil ▴ 130
0
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0
replies
2.0k
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Comment: Comment: Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
2.7 years ago by Chvatil ▴ 130
0
votes
0
replies
2.0k
views
Comment: Comment: Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
2.7 years ago by Chvatil ▴ 130
0
votes
1
reply
2.0k
views
Comment: Comment: Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
2.7 years ago by Chvatil ▴ 130
4
votes
7
replies
2.0k
views
Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
uniprot fetch fasta proteome bash
2.7 years ago by Chvatil ▴ 130
0
votes
0
replies
427
views
Gene ontology analysis on viral proteins
gene go ontology
2.9 years ago by Chvatil ▴ 130
0
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1
reply
1.8k
views
Comment: Comment: Using snakemake in order to download reads and run hisat2 mapping
3.0 years ago by Chvatil ▴ 130
0
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0
replies
1.8k
views
Comment: Comment: Using snakemake in order to download reads and run hisat2 mapping
3.0 years ago by Chvatil ▴ 130
0
votes
2
replies
1.8k
views
Comment: Comment: Using snakemake in order to download reads and run hisat2 mapping
3.0 years ago by Chvatil ▴ 130
0
votes
1
reply
1.8k
views
Comment: Comment: Using snakemake in order to download reads and run hisat2 mapping
3.0 years ago by Chvatil ▴ 130
0
votes
1
reply
1.8k
views
Comment: Comment: Using snakemake in order to download reads and run hisat2 mapping
3.0 years ago by Chvatil ▴ 130
0
votes
0
replies
1.8k
views
Comment: Comment: Using snakemake in order to download reads and run hisat2 mapping
3.0 years ago by Chvatil ▴ 130
2
votes
11
replies
1.8k
views
Using snakemake in order to download reads and run hisat2 mapping
hisat2 snakemake python
updated 3.0 years ago by 22k • written 3.0 years ago by ▴ 130
0
votes
1
reply
841
views
Add features on newick tree (then by creating a NHX format)
newick nhx phylogeny python r
3.1 years ago by Chvatil ▴ 130
7
votes
1
reply
1.2k
views
Calculate tetranucleotide frequency deviation on python
biopython python TNFs
updated 3.3 years ago by ★ 27k • written 3.3 years ago by ▴ 130
0
votes
1
reply
611
views
Find repeat regions on 100 eukaryotic assemblies
repeat Assembly
updated 3.4 years ago by 6.4k • written 3.4 years ago by ▴ 130
0
votes
1
reply
1.2k
views
Comment: C: Question about codeml
3.4 years ago by Chvatil ▴ 130
0
votes
4
replies
1.2k
views
Question about codeml
codeml paml phylogeny tree ds
updated 2.4 years ago by ▴ 190 • written 3.4 years ago by ▴ 130
0
votes
0
replies
1.1k
views
Runmode = -2 in Biopython PAML impossible ?
paml codeml biopython python3
3.4 years ago by Chvatil ▴ 130
0
votes
0
replies
693
views
Programme to calculate dN/dS between pair of sequences in a seq alignment
gene dn/ds codeml paml sequence
3.4 years ago by Chvatil ▴ 130
3
votes
1
reply
758
views
Extract specific variant genome ID from a VCF file
variant genome vcf
updated 3.5 years ago by 14k • written 3.5 years ago by ▴ 130
0
votes
0
replies
2.1k
views
Comment: C: Difference between mate-pair, paired-end and long read
3.5 years ago by Chvatil ▴ 130
0
votes
1
reply
2.1k
views
Comment: C: Difference between mate-pair, paired-end and long read
3.5 years ago by Chvatil ▴ 130
3
votes
5
replies
2.1k
views
Difference between mate-pair, paired-end and long read
assembly read
3.5 years ago by Chvatil ▴ 130
0
votes
0
replies
539
views
retrieve the properties of the reads on NCBI on the command line
Assembly reads ncbi
3.5 years ago by Chvatil ▴ 130
0
votes
0
replies
5.1k
views
Comment: C: HISAT2- (ERR): hisat2-align exited with value 134
3.6 years ago by Chvatil ▴ 130
0
votes
1
reply
5.1k
views
Comment: C: HISAT2- (ERR): hisat2-align exited with value 134
3.6 years ago by Chvatil ▴ 130
0
votes
0
replies
5.1k
views
Comment: C: HISAT2- (ERR): hisat2-align exited with value 134
3.6 years ago by Chvatil ▴ 130
0
votes
0
replies
539
views
detect and correct misassemblies in eucaryotic scaffolds
reapr mec Assembly
3.6 years ago by Chvatil ▴ 130
2
votes
5
replies
5.1k
views
HISAT2- (ERR): hisat2-align exited with value 134
hisat mapping
updated 3.6 years ago by ★ 1.4k • written 3.6 years ago by ▴ 130
2
votes
3
replies
5.0k
views
Size of the nr database fasta file?
nr ncbi database
updated 3.8 years ago by ▴ 460 • written 3.8 years ago by ▴ 130
0
votes
0
replies
5.0k
views
Comment: C: Size of the nr database fasta file?
3.8 years ago by Chvatil ▴ 130
3
votes
2
replies
811
views
Eucaryotic gene predictor within eucaryote genome
gene
updated 3.8 years ago by 8.5k • written 3.8 years ago by ▴ 130
0
votes
0
replies
1.1k
views
disable the SRA cache in HISAT2
hisat rnaseq mapping
3.8 years ago by Chvatil ▴ 130
0
votes
0
replies
763
views
Comment: C: Test if a list of genes with coordinates are expressed (hisat2 data)
3.8 years ago by Chvatil ▴ 130
0
votes
3
replies
763
views
Test if a list of genes with coordinates are expressed (hisat2 data)
RNA-Seq transcription
updated 3.8 years ago by ▴ 230 • written 3.8 years ago by ▴ 130
0
votes
0
replies
1.6k
views
Comment: C: Using Bowtie and SRA mode
3.9 years ago by Chvatil ▴ 130
0
votes
1
reply
1.6k
views
Comment: C: Using Bowtie and SRA mode
3.9 years ago by Chvatil ▴ 130
0
votes
1
reply
1.6k
views
Comment: C: Using Bowtie and SRA mode
3.9 years ago by Chvatil ▴ 130
0
votes
6
replies
1.6k
views
Using Bowtie and SRA mode
bowtie mapping
3.9 years ago by Chvatil ▴ 130
0
votes
0
replies
1.4k
views
Comment: C: Create my own universel GO db from QuickGO in R
4.0 years ago by Chvatil ▴ 130
0
votes
2
replies
1.4k
views
Create my own universel GO db from QuickGO in R
GO ontology R
4.0 years ago by Chvatil ▴ 130
0
votes
1
reply
749
views
Plot loci on scaffold (graphic visualization in command line)
sequence genome scaffold
updated 4.0 years ago by 43k • written 4.0 years ago by ▴ 130
0
votes
0
replies
665
views
Comment: A: Find informations about virus families and their genomic structure
4.1 years ago by Chvatil ▴ 130
0
votes
1
reply
665
views
Find informations about virus families and their genomic structure
ncbi
4.1 years ago by Chvatil ▴ 130
0
votes
0
replies
835
views
Comment: C: Get sequencing informations from NCBI with acc number
4.1 years ago by Chvatil ▴ 130
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