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rbagnall ♦ 1.4k
Status: New
Handle: @rbagnall4544
Reputation: 1360
Email: r***********@hotmail.com
Joined: 13 months ago
Last seen: 14 months ago
Location: Australia

about me

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0
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5.4k
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Comment: C: Download all eQTL data for all the 9 tissues from GTEx Portal
14 months ago
rbagnall ♦ 1.4k
0
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1
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237
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Comment: C: How do we call this phenomenon in evolution?
20 months ago
rbagnall ♦ 1.4k
0
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1
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533
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Answer: A: RNA-seq alignment rate is too low.
20 months ago
rbagnall ♦ 1.4k
0
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0
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988
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Answer: A: Looking for walkthrough guide on Rare Variant Association Analysis
24 months ago
rbagnall ♦ 1.4k
3
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0
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722
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Answer: A: Detecting Homozygous Insertion from Sanger Seq
2.0 years ago
rbagnall ♦ 1.4k
0
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1
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697
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Comment: C: no successful variants lifted over from hs37d5_plusRibo_plusOncoViruses_plusERCC
2.0 years ago
rbagnall ♦ 1.4k
1
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1
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537
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Comment: C: Find Intersections Between ClinVar Track and VCF In IGV
2.0 years ago
rbagnall ♦ 1.4k
1
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1
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537
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Comment: C: Find Intersections Between ClinVar Track and VCF In IGV
2.1 years ago
rbagnall ♦ 1.4k
3
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1
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537
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Answer: A: Find Intersections Between ClinVar Track and VCF In IGV
2.1 years ago
rbagnall ♦ 1.4k
2
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0
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737
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Comment: C: Update RefSeq database with Ensembl VEP
2.2 years ago
rbagnall ♦ 1.4k
4
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2
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737
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Update RefSeq database with Ensembl VEP
Ensembl VEP Refseq
2.2 years ago
rbagnall ♦ 1.4k • updated 2.2 years ago
Emily_Ensembl 18k
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1
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507
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Comment: C: How can I deal with this publication issue?
2.3 years ago
rbagnall ♦ 1.4k
1
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1
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633
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Answer: A: gnomad_AF from VEP is NA
2.3 years ago
rbagnall ♦ 1.4k
0
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0
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1.6k
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Comment: C: snpEff inappropriate interpretation of variants?
3.0 years ago
rbagnall ♦ 1.4k
2
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1
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1.6k
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Answer: A: snpEff inappropriate interpretation of variants?
3.0 years ago
rbagnall ♦ 1.4k
1
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0
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979
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Answer: A: Which tool to calculate per site stats on vcf file?
3.0 years ago
rbagnall ♦ 1.4k
0
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0
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827
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Answer: A: Extracting Codons from a SNP alignment
3.1 years ago
rbagnall ♦ 1.4k
0
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1
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751
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Answer: A: CNVnator error :Can't determine length for 'chr1'. No reference genome specified
3.1 years ago
rbagnall ♦ 1.4k
1
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0
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1.2k
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Answer: A: Human Mitochondrial Variants Annotation
3.2 years ago
rbagnall ♦ 1.4k
1
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0
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919
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Answer: A: Do People Import VCF Files Into Databases? (2016 version)
3.9 years ago
rbagnall ♦ 1.4k
0
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0
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552
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Answer: A: Finding variations in mitochondrial genomes
4.0 years ago
rbagnall ♦ 1.4k
4
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2
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8.6k
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Comment: C: How to extract specific chromosome from vcf file
4.1 years ago
rbagnall ♦ 1.4k
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0
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696
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Comment: C: Number of SNPs captured by targeted sequencing panels
4.2 years ago
rbagnall ♦ 1.4k
1
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1
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696
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Answer: A: Number of SNPs captured by targeted sequencing panels
4.2 years ago
rbagnall ♦ 1.4k
1
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0
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761
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Answer: A: How to retrieve SNP numbers from the VCF then find information about them whethe
4.3 years ago
rbagnall ♦ 1.4k
1
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1
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999
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Answer: A: Targeted capture sequencing data
4.3 years ago
rbagnall ♦ 1.4k
0
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0
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840
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Answer: A: Dataset for NGS
4.3 years ago
rbagnall ♦ 1.4k
1
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0
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938
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Answer: A: Can a dsRNA get sequenced on illumina with the 125bp pair end library meant for
4.3 years ago
rbagnall ♦ 1.4k
1
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1
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813
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Answer: A: sequence head change!
4.4 years ago
rbagnall ♦ 1.4k
0
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1
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2.3k
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Comment: C: Using VCFTools (v0.1.13) with ExAC (release 0.3.1)
4.4 years ago
rbagnall ♦ 1.4k
4
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1
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944
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Answer: A: Confusing HGVS notation
4.4 years ago
rbagnall ♦ 1.4k
5
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1
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2.4k
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Answer: A: Explain bioinformatics to a 10 year old
4.4 years ago
rbagnall ♦ 1.4k
0
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1
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1.6k
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Comment: C: From gene symbol list to their coordinates
4.4 years ago
rbagnall ♦ 1.4k
0
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1
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1.6k
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Answer: A: From gene symbol list to their coordinates
4.4 years ago
rbagnall ♦ 1.4k
4
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1
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3.6k
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Answer: C: (SIFT, Polyphen, PROVEAN) vs. (ANNOVAR) vs. (LOFTEE)
4.5 years ago
rbagnall ♦ 1.4k
0
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1
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2.2k
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Comment: C: eigensoft smartpca error "OOPS -i flag not specified at smartpca.perl line 21
4.5 years ago
rbagnall ♦ 1.4k
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1.4k
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Comment: C: How can I find the most studied SNP of a gene?
4.5 years ago
rbagnall ♦ 1.4k
1
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3
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1.4k
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Answer: A: How can I find the most studied SNP of a gene?
4.5 years ago
rbagnall ♦ 1.4k
1
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0
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1.5k
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Comment: C: How to decide how broken a gene is
4.7 years ago
rbagnall ♦ 1.4k
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0
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1.7k
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Comment: C: LOD score of a single genotype
4.7 years ago
rbagnall ♦ 1.4k
1
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3
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1.7k
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LOD score of a single genotype
LOD score
4.7 years ago
rbagnall ♦ 1.4k • updated 4.7 years ago
Lemire • 390
2
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0
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1.1k
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Comment: C: Number of snps are very low
4.8 years ago
rbagnall ♦ 1.4k
1
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1
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882
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Comment: C: VCF file format
4.8 years ago
rbagnall ♦ 1.4k
0
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0
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910
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Answer: A: RealignerTargetCreator GATK alignment
4.9 years ago
rbagnall ♦ 1.4k
0
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0
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1.2k
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Comment: C: How many base pairs are there in All exon V4+UTR from Agilent manufacture?
4.9 years ago
rbagnall ♦ 1.4k
1
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1
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1.2k
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Answer: A: How many base pairs are there in All exon V4+UTR from Agilent manufacture?
4.9 years ago
rbagnall ♦ 1.4k
0
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0
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1.6k
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Comment: C: Whole exome length of exons from bam file
4.9 years ago
rbagnall ♦ 1.4k
0
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0
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2.7k
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Answer: A: PCA plot Fig software
4.9 years ago
rbagnall ♦ 1.4k
1
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0
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2.2k
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Comment: C: Variant calling for MNP
5.0 years ago
rbagnall ♦ 1.4k
0
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0
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2.2k
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Comment: C: Variant calling for MNP
5.0 years ago
rbagnall ♦ 1.4k
0
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1
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2.2k
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Comment: C: Variant calling for MNP
5.0 years ago
rbagnall ♦ 1.4k
0
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0
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3.2k
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Comment: C: vcf SNP file minor allele frequency filter?
5.0 years ago
rbagnall ♦ 1.4k
0
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2
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986
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Answer: A: Merging sets of autosomal SNPs from the same array, but I am losing ~50,000 SNPs
5.0 years ago
rbagnall ♦ 1.4k
1
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0
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13k
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Comment: C: Extract a particular data from text file using perl
5.1 years ago
rbagnall ♦ 1.4k
4
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0
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1.2k
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Answer: A: Looking for Jewish Exoms
5.1 years ago
rbagnall ♦ 1.4k
0
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2
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2.2k
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Comment: C: What's the best way to find all the possible cutting sites of an sequence-specif
5.1 years ago
rbagnall ♦ 1.4k
1
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1
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2.9k
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Comment: C: EIGENSOFT : Ploteig, 3D Plots
5.1 years ago
rbagnall ♦ 1.4k
5
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1
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2.9k
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Answer: A: EIGENSOFT : Ploteig, 3D Plots
5.1 years ago
rbagnall ♦ 1.4k
0
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1
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2.3k
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Comment: C: Large tab-delimited table of SNP data, how to filter out some rows based on rsID
5.1 years ago
rbagnall ♦ 1.4k
0
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0
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4.5k
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Answer: A: eigenstrat smartpca input files
5.2 years ago
rbagnall ♦ 1.4k
0
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0
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1.3k
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Answer: A: What is the most rational way and software for comapring a set of NGS WGS VCF fi
5.2 years ago
rbagnall ♦ 1.4k
4
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2
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2.3k
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Answer: C: Large tab-delimited table of SNP data, how to filter out some rows based on rsID
5.2 years ago
rbagnall ♦ 1.4k
0
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1
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1.4k
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Answer: A: Finding common genes
5.2 years ago
rbagnall ♦ 1.4k
0
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2
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1.3k
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Comment: C: Is there software that takes advantage of MarkedDuplicates for SNP calling?
5.3 years ago
rbagnall ♦ 1.4k
0
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0
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1.5k
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Comment: C: Block break from gVCF files
5.4 years ago
rbagnall ♦ 1.4k
0
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0
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1.5k
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Comment: C: Block break from gVCF files
5.4 years ago
rbagnall ♦ 1.4k
0
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1
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1.5k
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Answer: A: Block break from gVCF files
5.4 years ago
rbagnall ♦ 1.4k
2
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0
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1.1k
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Answer: A: Explanation on genotypes notations
5.4 years ago
rbagnall ♦ 1.4k
3
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0
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3.4k
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Answer: A: Recurrent de novo mutation
5.4 years ago
rbagnall ♦ 1.4k
1
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0
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3.3k
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Answer: A: what is next going to happen in bioinformatics?
5.4 years ago
rbagnall ♦ 1.4k
0
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1
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1.7k
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Answer: A: Indel results of GATK is not correct
5.5 years ago
rbagnall ♦ 1.4k
0
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1
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3.7k
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Comment: C: How can I download snp genotype file from 1000 Genome?
5.5 years ago
rbagnall ♦ 1.4k
2
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1
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3.7k
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Answer: A: How can I download snp genotype file from 1000 Genome?
5.5 years ago
rbagnall ♦ 1.4k
4
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1
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1.2k
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Answer: A: Matching genomic positions to protein funtional/sctructural domains
5.5 years ago
rbagnall ♦ 1.4k
0
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0
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1.3k
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Answer: A: Mt DNA haplogroup analysis from HTS data
5.6 years ago
rbagnall ♦ 1.4k
0
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0
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4.0k
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Comment: C: GATK: RealignerTargetCreator and IndelRealigner related questions
5.6 years ago
rbagnall ♦ 1.4k
2
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1
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3.2k
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Answer: A: 1000 Genomes and ESP Populations in Exome Aggregation Consortium Data
5.7 years ago
rbagnall ♦ 1.4k
4
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0
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9.7k
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Answer: A: Tutorial (How to analyze) on Exome sequencing. Common Errors. Best Practices.
5.7 years ago
rbagnall ♦ 1.4k
1
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0
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8.3k
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Answer: A: Crac: Funny And/Or Weird Names For Bioinformatics Tools
5.9 years ago
rbagnall ♦ 1.4k
1
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0
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1.5k
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Answer: A: Variant prevalence not listed
5.9 years ago
rbagnall ♦ 1.4k
2
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0
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2.5k
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Answer: A: Frequency of Exome data from 1000 Genomes Project
5.9 years ago
rbagnall ♦ 1.4k
0
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1
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4.0k
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Comment: C: Free HiSeq X Ten human genome fastq test data
6.0 years ago
rbagnall ♦ 1.4k
13
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7
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4.0k
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News: Free HiSeq X Ten human genome fastq test data
next-gen HiSeq X Ten Human genome Fastq News
6.0 years ago
rbagnall ♦ 1.4k • updated 6.0 years ago
Istvan Albert 87k
3
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0
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46k
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Answer: A: How to plot coverage and depth statistics of a bam file
6.1 years ago
rbagnall ♦ 1.4k
1
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0
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1.4k
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Answer: A: How can i run programs like SIFT, PolyPhen, PhDSNP from my java code
6.2 years ago
rbagnall ♦ 1.4k
0
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0
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1.8k
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Comment: C: Illumina Custom amplicon data issue
6.2 years ago
rbagnall ♦ 1.4k
1
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0
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1.6k
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Answer: A: Access To Multiple Sample High-Throughput Sequencing Diploid Data With Snps Vali
6.2 years ago
rbagnall ♦ 1.4k
3
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0
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1.2k
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Answer: A: Trouble filtering CDS regions from Nextera Enrichment design
6.2 years ago
rbagnall ♦ 1.4k
0
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1
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2.1k
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Answer: A: Targetscan prediction locally
6.2 years ago
rbagnall ♦ 1.4k
1
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1
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1.8k
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Answer: A: Illumina Custom amplicon data issue
6.3 years ago
rbagnall ♦ 1.4k
0
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1
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2.6k
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Comment: C: Variant Annotation, Analysis and Search Tool - VAAST2
6.3 years ago
rbagnall ♦ 1.4k
11
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0
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5.9k
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Answer: A: What does the breakpoint sequence mean?
6.3 years ago
rbagnall ♦ 1.4k
1
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2
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2.1k
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Comment: C: gene identification by exome seq of case control
6.3 years ago
rbagnall ♦ 1.4k
3
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2
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2.1k
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Answer: A: gene identification by exome seq of case control
6.3 years ago
rbagnall ♦ 1.4k
2
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0
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2.7k
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Answer: A: Ranking And Prioritizing Non-Coding Variants
6.3 years ago
rbagnall ♦ 1.4k
0
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0
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1.0k
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Answer: A: Pcr Free Variant Calls
6.5 years ago
rbagnall ♦ 1.4k
3
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1
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1.6k
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Answer: A: Api Or Ui For 1000 Genomes Sample Genotypes
6.5 years ago
rbagnall ♦ 1.4k
0
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1
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1.6k
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Answer: A: Snps Mapped From Ncbi 36 To 37
6.7 years ago
rbagnall ♦ 1.4k
2
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0
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3.2k
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Answer: A: Analyses With Case-Only Exomes
7.0 years ago
rbagnall ♦ 1.4k
8
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2
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1.8k
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Answer: A: Grep A Pattern From File
7.2 years ago
rbagnall ♦ 1.4k
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