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0
votes
0
replies
424
views
Answer:
Answer: How to make the Input track flat for ChIP-seq
3 months ago by
Ian
6.0k
0
votes
0
replies
562
views
Answer:
Answer: DEG gene list and find common TF from public ChlP-Seq data
6 months ago by
Ian
6.0k
13
votes
6
replies
2.8k
views
Are there mm39/GRCm39 blacklist regions?
blacklist
updated 8 months ago by
igor
13k • written 23 months ago by
Ian
6.0k
1
vote
1
reply
880
views
How to convert a HG19 Hi-C hic file to HG38?
Hi-C
hic
updated 10 months ago by
Y
• 0 • written 2.8 years ago by
Ian
6.0k
0
votes
0
replies
1.1k
views
Comment:
Comment: Custom genome installation in SigProfileMatrixGenerator
12 months ago by
Ian
6.0k
0
votes
1
reply
766
views
Answer:
Answer: macs2 for centromere chip-seq peak calling
13 months ago by
Ian
6.0k
0
votes
0
replies
1.1k
views
Comment:
Comment: ChIP-seq problem
16 months ago by
Ian
6.0k
0
votes
1
reply
1.1k
views
Comment:
Comment: ChIP-seq problem
16 months ago by
Ian
6.0k
0
votes
1
reply
1.0k
views
Answer:
Answer: How to create bigwig file in galaxy after MACS procedure(Chip Seq)
16 months ago by
Ian
6.0k
1
vote
1
reply
1.1k
views
Answer:
Answer: Upregulated and downregulated genes from ChIP-seq data
16 months ago by
Ian
6.0k
0
votes
0
replies
2.8k
views
Comment:
Comment: Are there mm39/GRCm39 blacklist regions?
23 months ago by
Ian
6.0k
0
votes
0
replies
2.8k
views
Comment:
Comment: Are there mm39/GRCm39 blacklist regions?
23 months ago by
Ian
6.0k
0
votes
1
reply
1.3k
views
Comment:
Comment: How to count mapping rates for ChIP-seq?
23 months ago by
Ian
6.0k
1
vote
1
reply
4.7k
views
Answer:
Answer: How to use output from GeneMark-ES to identify function?
2.4 years ago by
Ian
6.0k
1
vote
3
replies
1.1k
views
Custom genome installation in SigProfileMatrixGenerator
genome
custom
SigProfilerMatrixGenerator
12 months ago by
Ian
6.0k
1
vote
1
reply
1.1k
views
Answer:
Answer: Custom genome installation in SigProfileMatrixGenerator
2.9 years ago by
Ian
6.0k
1
vote
3
replies
1.2k
views
Tool/method to calculate the sequence context of variants?
sequence
context
variant
3.0 years ago by
Ian
6.0k
1
vote
0
replies
1.2k
views
Answer:
Answer: Tool/method to calculate the sequence context of variants?
3.0 years ago by
Ian
6.0k
0
votes
0
replies
1.2k
views
Comment:
Comment: Tool/method to calculate the sequence context of variants?
3.0 years ago by
Ian
6.0k
3
votes
3
replies
2.2k
views
Comparing input read subtracted ChIP-read profiles using Deeptools v3.4.3
deeptools
3.6 years ago by
Ian
6.0k
0
votes
1
reply
2.2k
views
Comment:
C: Comparing input read subtracted ChIP-read profiles using Deeptools2
3.6 years ago by
Ian
6.0k
8
votes
2
replies
6.3k
views
Bedtools Intersectbed
bedtools
intersect
coverage
coverage
updated 3.6 years ago by
Biostar
20 • written 12.4 years ago by
Ian
6.0k
7
votes
0
replies
59k
views
Answer:
A: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 3.9 years ago by
Ram
43k • written 13.0 years ago by
Ian
6.0k
1
vote
0
replies
59k
views
Comment:
C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 3.9 years ago by
Ram
43k • written 13.0 years ago by
Ian
6.0k
3
votes
1
reply
7.5k
views
Tool:
Weeder 2.0 - motif discovery tool updated
motif-discovery
chip-seq
weeder
updated 10 months ago by
Ram
43k • written 9.5 years ago by
Ian
6.0k
6
votes
0
replies
4.8k
views
Answer:
A: MACS2 Peak Calling : Different number of peaks for each replicate
updated 4.3 years ago by
Ram
43k • written 8.2 years ago by
Ian
6.0k
0
votes
0
replies
5.0k
views
Answer:
A: DiffBind - DESeq2 Consensus peakset
updated 4.3 years ago by
Ram
43k • written 9.9 years ago by
Ian
6.0k
0
votes
0
replies
5.0k
views
Answer:
A: how to calculate distance between CpG site and TSS?
updated 4.3 years ago by
Ram
43k • written 9.9 years ago by
Ian
6.0k
0
votes
1
reply
24k
views
Comment:
C: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
updated 4.3 years ago by
Ram
43k • written 10.0 years ago by
Ian
6.0k
1
vote
0
replies
9.1k
views
Answer:
A: Read depth and Hi-C resolution
updated 4.3 years ago by
Ram
43k • written 8.3 years ago by
Ian
6.0k
0
votes
1
reply
11k
views
Answer:
A: Difference between UCSC and Ensembl genomes
updated 4.3 years ago by
Ram
43k • written 8.3 years ago by
Ian
6.0k
0
votes
0
replies
24k
views
Comment:
C: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
updated 4.3 years ago by
Ram
43k • written 10.0 years ago by
Ian
6.0k
2
votes
1
reply
1.2k
views
Answer:
A: found non conserved regions between 2 genomes
4.4 years ago by
Ian
6.0k
2
votes
0
replies
3.2k
views
Answer:
A: Program For Filtering Solid Reads
updated 4.4 years ago by
Ram
43k • written 11.0 years ago by
Ian
6.0k
0
votes
1
reply
20k
views
Answer:
A: Error when trying to use samtools to convert a sam files to a bam file
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
Ian
6.0k
0
votes
0
replies
7.6k
views
Answer:
A: Doubts related to MACS tool
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
Ian
6.0k
1
vote
0
replies
3.8k
views
Answer:
A: High Kmer Content in middle of the read
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
Ian
6.0k
0
votes
0
replies
2.7k
views
Answer:
A: Differential Peak Calling with Replicates
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
Ian
6.0k
0
votes
0
replies
2.5k
views
Answer:
A: Local alternative to galaxy "Extract Genomic DNA using coordinates" tool
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
Ian
6.0k
0
votes
1
reply
2.0k
views
Answer:
A: Help with PScan and user defined matrices
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
Ian
6.0k
1
vote
1
reply
4.8k
views
Answer:
A: Why some lines of BAM file do not contain NH tag
updated 4.4 years ago by
Ram
43k • written 8.5 years ago by
Ian
6.0k
0
votes
2
replies
16k
views
Comment:
C: Bowtie 2 - is there a way to discard reads mapping to multiple locations?
updated 4.4 years ago by
Ram
43k • written 8.5 years ago by
Ian
6.0k
0
votes
1
reply
16k
views
Comment:
C: Bowtie 2 - is there a way to discard reads mapping to multiple locations?
updated 4.4 years ago by
Ram
43k • written 8.5 years ago by
Ian
6.0k
9
votes
2
replies
16k
views
Answer:
A: Bowtie 2 - is there a way to discard reads mapping to multiple locations?
updated 4.4 years ago by
Ram
43k • written 8.5 years ago by
Ian
6.0k
2
votes
0
replies
4.0k
views
Answer:
A: Methylation Bisulfite-Sequencing: Bismark, BS seeker, BSMAP, RMAPBS, MAQ
updated 4.4 years ago by
Ram
43k • written 8.6 years ago by
Ian
6.0k
6
votes
3
replies
9.3k
views
Ion Torrent Fastq Format Type?
ion-torrent
fastq
updated 4.5 years ago by
lakhujanivijay
5.8k • written 12.0 years ago by
Ian
6.0k
1
vote
0
replies
6.7k
views
Answer:
A: How to use Samtools to remove reads whose mate does not map as expected
updated 4.5 years ago by
Ram
43k • written 9.8 years ago by
Ian
6.0k
0
votes
0
replies
2.4k
views
Answer:
A: Paper(S) Discussing Issues In Quality Assessment Of Ngs Data
updated 4.6 years ago by
Ram
43k • written 12.1 years ago by
Ian
6.0k
1
vote
0
replies
3.8k
views
Answer:
A: Fine Tune Ngs Downstream Analyses Using Genome Mappability ?
updated 4.6 years ago by
Ram
43k • written 12.1 years ago by
Ian
6.0k
0
votes
0
replies
2.7k
views
Answer:
A: What Nucleosome Positioning Software Do You Use?
updated 4.6 years ago by
Ram
43k • written 12.1 years ago by
Ian
6.0k
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