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Ian 5.4k
Role: Moderator
Status: New
Handle: @Ian452
Status: New
Reputation: 5430
Email: d*********@gmail.com
Joined: 6 months ago
Twitter: IanDcalling
Google Scholar: K74MpBUAAAAJ
Last seen: 6 months ago
Location: University of Manchester, UK

Member of the Faculty of Life Science's bioinformatics core facility.

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http://www.youtube.com/user/ManchesterBCF/videos?view=1&flow=grid for video tutorials.

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I specialise in ChIP-seq analysis, but also run RNA-seq and other NGS applications. Data comes, almost exclusively from illumina sequencers, but I used to mostly analyse SOLiD sequence.

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I am interested in the analysis, organisation and presentation of genomics data. I have a special place in my heart for the hunting of transcription factor binding sites.

430 results • Page 1 of 11
Answer: A: BagFoot TF foot printing
2 Votes | 0 Replies
9 months ago Ian 5.4k
Answer: A: How To Convert 454 Data To Sam Format?
1 Vote | 0 Replies
9.2 years ago Ian 5.4k • updated 10 months ago RamRS 21k
Answer: A: Sorting BAM files from HISAT2 for DEXSeq
0 Votes | 0 Replies
13 months ago Ian 5.4k
Answer: A: GO analysis: DAVID vs GREAT vs GOrilla
3 Votes | 1 Reply
3.8 years ago Ian 5.4k • updated 15 months ago RamRS 21k
Answer: A: Best trimming tool
1 Vote | 0 Replies
3.8 years ago Ian 5.4k • updated 15 months ago RamRS 21k
Conversion Of Bar To Wig Format
10 Votes | 7 Replies
9.5 years ago Ian 5.4k • updated 15 months ago RamRS 21k
Answer: A: How To Process Large Chipseq Data?
3 Votes | 0 Replies
9.4 years ago Ian 5.4k • updated 15 months ago RamRS 21k
Answer: A: How to visualize Hi-C bed file format?
0 Votes | 0 Replies
15 months ago Ian 5.4k
Answer: A: Using HTseq-count for Pseudomonas Aeruginosa data
1 Vote | 2 Replies
16 months ago Ian 5.4k
Answer: A: How find correlations between ChIP-seq tracks?
1 Vote | 0 Replies
16 months ago Ian 5.4k
Answer: A: Method for creating an EMBL formatted annotated sequence?
2 Votes | 0 Replies
21 months ago Ian 5.4k
Extracting Ucsc Canonical Gene Information
0 Votes | 2 Replies
8.3 years ago Ian 5.4k • updated 22 months ago Biostar 20
Comment: C: Biological significance of Fold_enrichment in macs2
0 Votes | 0 Replies
23 months ago Ian 5.4k
Answer: A: How to repair *all* problems identified by FastQC?
2 Votes | 0 Replies
24 months ago Ian 5.4k
Answer: A: Biological significance of Fold_enrichment in macs2
2 Votes | 1 Reply
24 months ago Ian 5.4k
Answer: A: Features for detection of gene.
0 Votes | 0 Replies
2.0 years ago Ian 5.4k
Comment: C: How can I locate motif in DNA sequence.
1 Vote | 0 Replies
2.1 years ago Ian 5.4k
Comment: C: BagFoot TF foot printing
1 Vote | 0 Replies
2.1 years ago Ian 5.4k
Answer: A: Normalized Bigwig Files
9 Votes | 1 Reply
2.3 years ago Ian 5.4k
Comment: C: How to choose Trimmomatic's parameter 'MINLEN '?
1 Vote | 1 Reply
2.5 years ago Ian 5.4k
Answer: A: Differential chip-seq peak calling using macs2
0 Votes | 0 Replies
2.5 years ago Ian 5.4k
Answer: A: How to choose Trimmomatic's parameter 'MINLEN '?
3 Votes | 1 Reply
2.5 years ago Ian 5.4k
Answer: A: ChIP-seq Input replicate correlation
2 Votes | 0 Replies
2.6 years ago Ian 5.4k
Comment: C: Peak calling for broad histone-modification regions
1 Vote | 0 Replies
2.6 years ago Ian 5.4k
Answer: A: Filter MACS peaks by enrichment/FDR?
2 Votes | 1 Reply
2.6 years ago Ian 5.4k
Comment: C: prepare pair-ended reads for peak calling
0 Votes | 1 Reply
2.6 years ago Ian 5.4k
Comment: C: prepare pair-ended reads for peak calling
0 Votes | 1 Reply
2.7 years ago Ian 5.4k
Answer: A: ChIP on chip array cover genome or promoter regions?
1 Vote | 1 Reply
2.8 years ago Ian 5.4k
Answer: A: Paired end and single end with MACS2
2 Votes | 1 Reply
2.9 years ago Ian 5.4k
430 results • Page 1 of 11
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