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3
votes
6
replies
5.6k
views
Get all the nucleotides from a bam file that is aligning to specific position in the genome
samtools
pysam
genome
position
alignment
updated 3.6 years ago by
Kevin Blighe
87k • written 5.7 years ago by
rsafavi
▴ 60
0
votes
1
reply
797
views
going from the merged bam to original bam files
samtools
bam
merge
4.5 years ago by
rsafavi
▴ 60
0
votes
1
reply
1.3k
views
WGCNA Eigengene interpretation
WGCNA
Eigengene
clustering
5.0 years ago by
rsafavi
▴ 60
3
votes
3
replies
2.1k
views
HUGO and Ensembl ids
RNA-Seq
single cell
hugo
Ensembl
updated 5.4 years ago by
EagleEye
7.5k • written 5.4 years ago by
rsafavi
▴ 60
0
votes
1
reply
22k
views
Comment:
C: Why am I getting different ensembl gene ids for a given gene symbol?
5.4 years ago by
rsafavi
▴ 60
1
vote
1
reply
3.1k
views
Comment:
C: Remove secondary alignments in RNA-seq analysis?
5.6 years ago by
rsafavi
▴ 60
1
vote
0
replies
5.6k
views
Answer:
A: Get all the nucleotides from a bam file that is aligning to specific position in
5.7 years ago by
rsafavi
▴ 60
0
votes
1
reply
5.6k
views
Comment:
C: Get all the nucleotides from a bam file that is aligning to specific position in
5.7 years ago by
rsafavi
▴ 60
0
votes
0
replies
4.6k
views
Comment:
C: Finding intergenic regions in bed file?
5.7 years ago by
rsafavi
▴ 60
0
votes
1
reply
4.4k
views
Comment:
C: featureCounts for aligned reads
5.8 years ago by
rsafavi
▴ 60
0
votes
0
replies
4.4k
views
Comment:
C: featureCounts for aligned reads
5.8 years ago by
rsafavi
▴ 60
2
votes
5
replies
4.4k
views
featureCounts for aligned reads
featurecounts
RNAseq
differential
expression
DE
updated 5.8 years ago by
GenoMax
140k • written 5.8 years ago by
rsafavi
▴ 60
0
votes
0
replies
1.5k
views
What is the difference between Repeat Masker and Window Masker from genom browser
repeatmasker
windowmasker
genombrowser
5.8 years ago by
rsafavi
▴ 60
9
votes
10
replies
8.9k
views
Filtering rRNA from RNAseq data
RNA-Seq
rRNA
fastqc
sortmerna
5.8 years ago by
rsafavi
▴ 60
4
votes
1
reply
8.9k
views
Answer:
A: Filtering rRNA from RNAseq data
5.8 years ago by
rsafavi
▴ 60
0
votes
0
replies
12k
views
Comment:
C: RNA-seq rRNA contamination
5.8 years ago by
rsafavi
▴ 60
0
votes
0
replies
8.9k
views
Comment:
C: Filtering rRNA from RNAseq data
5.8 years ago by
rsafavi
▴ 60
1
vote
1
reply
2.9k
views
Analyzing FastQC report
RNA-Seq
fastqc
5.8 years ago by
rsafavi
▴ 60
0
votes
0
replies
2.6k
views
Comment:
C: RNAseq analysis with DEGseq and no replicates
6.1 years ago by
rsafavi
▴ 60
0
votes
1
reply
2.6k
views
Comment:
C: RNAseq analysis with DEGseq and no replicates
6.1 years ago by
rsafavi
▴ 60
2
votes
6
replies
2.6k
views
RNAseq analysis with DEGseq and no replicates
RNA-Seq
noreplicates
DEGseq
6.1 years ago by
rsafavi
▴ 60
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